Factsheet for PGSC0003DMT400029759

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078740.1.1	Tomato	plastid	99.69	81.12
PGSC0003DMT400081904	Potato	plastid	87.15	70.92
HORVU7Hr1G085220.11	Barley	plastid	82.45	70.7
Os09t0277800-01	Rice	plastid	81.82	70.35
TraesCS5A01G172700.1	Wheat	plastid	82.45	70.32
Os08t0327400-01	Rice	plastid	82.45	70.13
TraesCS5D01G177200.1	Wheat	plastid	82.13	70.05
TraesCS7D01G352900.1	Wheat	golgi, plastid	82.45	69.95
TraesCS7B01G258300.1	Wheat	plastid	82.45	69.95
TraesCS7A01G370200.1	Wheat	plastid	82.45	69.95
TraesCS5B01G170100.1	Wheat	golgi, plastid	81.82	69.79
KXG25034	Sorghum	plastid	80.56	69.27
KXG35263	Sorghum	plastid	80.25	68.45
Zm00001d019926_P004	Maize	plastid	79.94	68.18
GSMUA_Achr1P19640_001	Banana	plastid	81.5	68.06
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	60.5	67.72
GSMUA_Achr4P19270_001	Banana	plastid	79.31	66.06
Zm00001d049975_P001	Maize	plastid	73.04	60.99
HORVU5Hr1G053010.2	Barley	plastid	82.13	58.61
VIT_08s0007g06390.t01	Wine grape	golgi, plasma membrane, vacuole	88.4	56.74
GSMUA_Achr3P11700_001	Banana	plastid	51.41	55.22
Zm00001d030275_P001	Maize	plastid	13.79	31.65
Zm00001d030276_P001	Maize	plastid	13.79	31.65
Zm00001d030277_P001	Maize	cytosol, plastid	10.97	29.41
Zm00001d030274_P001	Maize	cytosol	2.19	10.29

Protein Annotations

KEGG:00061+1.3.1.9	Gene3D:1.10.8.400	Gene3D:3.40.50.720	MapMan:5.1.4.5	InterPro:Enoyl-ACP_Rdtase_NADH	GO:GO:0003674
GO:GO:0003824	GO:GO:0004318	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0055114	UniProt:M1ATD0	InterPro:NAD(P)-bd_dom_sf
PFAM:PF13561	EnsemblPlantsGene:PGSC0003DMG400011436	PGSC:PGSC0003DMG400011436	EnsemblPlants:PGSC0003DMT400029759	PIRSF:PIRSF000094	PRINTS:PR00081
PANTHER:PTHR43159	PANTHER:PTHR43159:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI0002948746	SEG:seg

Description

Enoyl-acyl-carrier-protein reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400011436]

Coordinates

chr10:+:58941900..58946456

Molecular Weight (calculated)

33582.1 Da

IEP (calculated)

5.438

GRAVY (calculated)

0.051

Length

319 amino acids

Sequence
(BLAST)

001: MSGASEQVPV SGLPIDLRGK RAFIAGIADD NGYGWAIAKS LAAAGAEILV GTWVPALNIF ETSLRRGKFD QSRVLPDGSL MEIAKVYPLD AVFDSPEDVP
101: EDVKTNKRYA GSSKWTVSEV AESVKQDFGT IDILVHSLAN GPEVSKLLSE TSRKGYLAAI SASSYSFISL LKHFLPIMNP GGATISLTYI ASERIIPGYG
201: GGMSSAKAAL ESDTKVLAFE AGRKHKVRVN TISAGPLGSR AAKAIGFIDM MINYSLENAP LQKELYAEEV GNTAAFLASP LASAITGATV YVDNGLNAMG
301: VGVDSPAFTG LDIPKDNKS

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.