Factsheet for Solyc10g078740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029759	Potato	extracellular	81.12	99.69
Solyc01g006450.2.1	Tomato	plastid	77.04	77.04
TraesCS5A01G172700.1	Wheat	plastid	72.19	75.67
HORVU7Hr1G085220.11	Barley	plastid	71.68	75.54
Os09t0277800-01	Rice	plastid	71.43	75.47
Os08t0327400-01	Rice	plastid	71.94	75.2
TraesCS5D01G177200.1	Wheat	plastid	71.43	74.87
TraesCS5B01G170100.1	Wheat	golgi, plastid	71.43	74.87
TraesCS7D01G352900.1	Wheat	golgi, plastid	71.68	74.73
TraesCS7A01G370200.1	Wheat	plastid	71.68	74.73
KXG35263	Sorghum	plastid	71.17	74.6
TraesCS7B01G258300.1	Wheat	plastid	71.43	74.47
Zm00001d019926_P004	Maize	plastid	70.41	73.8
KXG25034	Sorghum	plastid	69.64	73.58
GSMUA_Achr1P19640_001	Banana	plastid	70.41	72.25
GSMUA_Achr4P19270_001	Banana	plastid	68.62	70.23
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	49.49	68.07
Zm00001d049975_P001	Maize	plastid	63.27	64.92
HORVU5Hr1G053010.2	Barley	plastid	71.68	62.86
VIT_08s0007g06390.t01	Wine grape	golgi, plasma membrane, vacuole	77.81	61.37
GSMUA_Achr3P11700_001	Banana	plastid	44.13	58.25
Zm00001d030275_P001	Maize	plastid	12.24	34.53
Zm00001d030276_P001	Maize	plastid	12.24	34.53
Zm00001d030277_P001	Maize	cytosol, plastid	9.95	32.77
Zm00001d030274_P001	Maize	cytosol	2.81	16.18

Protein Annotations

EnsemblPlants:Solyc10g078740.1.1	EnsemblPlantsGene:Solyc10g078740.1	Gene3D:1.10.8.400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43159	PANTHER:PTHR43159:SF1	PFAM:PF13561	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI000276A3E2	UniProt:K4D2B6	MapMan:5.1.4.5	:	:	:

Description

No Description!

Coordinates

chr10:-:60467744..60470714

Molecular Weight (calculated)

41612.9 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.026

Length

392 amino acids

Sequence
(BLAST)

001: MAANTTPGLQ IQATKQCIPA SQNVSKMSTM SFNFGSKRKS FTDFRSSSHI SLAKPIHSFK LAPIKFERMV TKAMSGASEQ VPVSGLPIDL RGKRAFIAGI
101: ADDNGYGWAI AKSLAAAGAE ILVGTWVPAL NIFETSLRRG KFDQSRVLPD GSLMEIAKVY PLDAVFDSPE DVPEDVKTNK RYAGSSKWTV SEVAESVKQD
201: FGTIDILVHS LANGPEVSKP LSETSRKGYL AAISASSYSF ISLLKHFLPI MNPGGATISL TYIASERIIP GYGGGMSSAK AALESDTKVL AFEAGRKHKV
301: RVNTISAGPL GSRAAKAIGF IDMMINYSLE NAPLQKELYA EEVGNTAAFL ASPLASAITG ATVYVDNGLN AMGVGVDSPA FTGLDIPKDN KS

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.