CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01310.t01	Wine grape	plastid	83.42	83.42
KRH46610	Soybean	plastid	80.87	80.66
Solyc01g006450.2.1	Tomato	plastid	80.61	80.61
PGSC0003DMT400081904	Potato	plastid	80.36	80.36
KRH24187	Soybean	nucleus	94.13	80.04
CDY18037	Canola	plastid	70.66	75.27
CDY33402	Canola	plastid	70.66	75.07
KRG99594	Soybean	cytosol	81.89	74.83
TraesCS5D01G177200.1	Wheat	plastid	69.9	73.26
TraesCS5A01G172700.1	Wheat	plastid	69.9	73.26
TraesCS5B01G170100.1	Wheat	golgi, plastid	69.64	72.99
AT2G05990.1	Thale cress	plastid	72.45	72.82
Os08t0327400-01	Rice	plastid	69.39	72.53
KXG25034	Sorghum	plastid	68.62	72.51
Os09t0277800-01	Rice	plastid	68.62	72.51
KXG35263	Sorghum	plastid	68.88	72.19
CDX93100	Canola	plastid	72.45	72.08
HORVU7Hr1G085220.11	Barley	plastid	68.37	72.04
CDY50414	Canola	plastid	69.9	71.73
Zm00001d019926_P004	Maize	plastid	68.37	71.66
TraesCS7A01G370200.1	Wheat	plastid	68.62	71.54
TraesCS7D01G352900.1	Wheat	golgi, plastid	68.62	71.54
TraesCS7B01G258300.1	Wheat	plastid	68.11	71.01
GSMUA_Achr1P19640_001	Banana	plastid	68.37	70.16
GSMUA_Achr4P19270_001	Banana	plastid	67.35	68.93
Bra013160.1-P	Field mustard	plastid	67.6	68.83
Bra013159.1-P	Field mustard	plastid	67.35	68.75
Zm00001d030591_P001	Maize	endoplasmic reticulum, plasma membrane	49.74	68.42
Zm00001d049975_P001	Maize	plastid	63.78	65.44
HORVU5Hr1G053010.2	Barley	plastid	69.9	61.3
GSMUA_Achr3P11700_001	Banana	plastid	45.41	59.93
Zm00001d030275_P001	Maize	plastid	12.24	34.53
Zm00001d030276_P001	Maize	plastid	12.24	34.53
Zm00001d030277_P001	Maize	cytosol, plastid	10.2	33.61
Zm00001d030274_P001	Maize	cytosol	3.57	20.59

Protein Annotations

EMBL:ACUP02006787	EnsemblPlants:KRH29159	EnsemblPlantsGene:GLYMA_11G101400	EntrezGene:100785606	Gene3D:1.10.8.400	Gene3D:3.40.50.720
InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	ncoils:Coil	PANTHER:PTHR43159	PANTHER:PTHR43159:SF1	PFAM:PF13561
PRINTS:PR00081	ProteinID:KRH29159	ProteinID:KRH29159.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000233C835
UniProt:I1LIT1	MapMan:5.1.4.5	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:7656079..7662063

Molecular Weight (calculated)

41298.4 Da

IEP (calculated)

9.152

GRAVY (calculated)

0.036

Length

392 amino acids

Sequence
(BLAST)

001: MTTTSFSGLQ FAMSRSCIPS SQKIADAGAV VLGGKSKIGS WNKLASACHI ASVQPFGRGF TSSSIKSVKS VTKAMTESSA QSAVSGLPIN LKGKRAFIAG
101: VADDNGYGWA IAKSLAAAGA EILVGTWVPA LNIFESSLRR GKFDESRVLP DGSLMEITKV YPLDAVFDNL DDVPEDIKAN KRYAGSSKWT VQEVAESVKE
201: DFGSIDILVH SLANGPEVTK PLLETSRKGY LAAISASSYS YVSLLKHFLP ILNPGGSSIS LTYIASERII PGYGGGMSSA KAALESDTRV LAFEAGRKRK
301: IRVNTISAGP LRSRAAKAIG FIDMMIDYSS ANAPLQKELS AEEVGNTAAF LASPLASAIT GTVLYVDNGL NAMGVGVDSP IFKDLDIPKD QH

Best Arabidopsis Sequence Match ( AT2G05990.2 )
(BLAST)

001: MAATAASSLQ IATRRPSMSS PSKILKAGTY IVGANPGNAS WDKLSCTRQL SNLGCLRNHS AVPTCKRPFS FSTRAMSESS ENKAPSGLPI DLRGKRAFIA
101: GIADDNGYGW AIAKSLAAAG AEILVGTWVP ALNIFETSLR RGKFDQSRVL PDGSLMEIKK VYALDAVFDN PEDVPEDVKT NKRYAGSSNW TVQEAAECVK
201: KDFGSIDILV HSLANGPEVS KPLLETSRKG YLAAISASSY SFVSLLRHFL PIMNPGGASI SLTYIASERI IPGYGGGMSS AKAALESDTR VLAYEAGRKS
301: NIRVNTISAG PLGSRAAKAI GFIDTMIEYS YNNGPIQKTL TADEVGNAAA FLASPLASAI TGATIYVDNG LNAMGVALDS PVFKDLNSKN

Arabidopsis Description

MOD1Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.