Factsheet for Solyc08g062630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021155	Potato	cytosol	96.46	96.46
KRH08282	Soybean	cytosol, endoplasmic reticulum, plasma membrane	28.23	85.47
GSMUA_Achr10P...	Banana	extracellular	14.97	77.51
VIT_04s0008g01430.t01	Wine grape	cytosol, plasma membrane, plastid	77.83	77.39
KRH52219	Soybean	cytosol, plasma membrane, plastid	75.31	75.49
AT4G33090.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	74.86	74.52
CDX75323	Canola	cytosol, plasma membrane, plastid	73.6	73.77
Bra011412.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	73.49	73.65
CDX68938	Canola	cytosol, plasma membrane, plastid	73.26	73.42
KRH61539	Soybean	cytosol	75.43	73.33
Bra034547.1-P	Field mustard	cytosol, plasma membrane, plastid	72.11	72.45
CDY28282	Canola	cytosol, plasma membrane, plastid	72.23	72.23
CDY45028	Canola	cytosol, plasma membrane, plastid	68.57	71.86
GSMUA_Achr10P...	Banana	cytosol	32.34	67.22
GSMUA_Achr10P...	Banana	mitochondrion	36.11	63.84
KRH39126	Soybean	cytosol, extracellular, plastid	13.49	48.36
Solyc04g049720.2.1	Tomato	cytosol	11.43	18.38

Protein Annotations

Gene3D:1.10.390.60	Gene3D:1.25.50.20	MapMan:19.4.5.6.5	Gene3D:2.60.40.1730	Gene3D:2.60.40.1910	InterPro:ERAP1-like_C_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004177	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008237	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0010013	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0042277	GO:GO:0043171
GO:GO:0046872	GO:GO:0070006	UniProt:K4CL50	InterPro:M1_APN-typ	PFAM:PF01433	PFAM:PF11838
PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF183	InterPro:Peptidase_M1	InterPro:Peptidase_M1_N	SUPFAM:SSF55486
SUPFAM:SSF63737	EnsemblPlantsGene:Solyc08g062630.2	EnsemblPlants:Solyc08g062630.2.1	UniParc:UPI000276B2AE	SEG:seg	:

Description

Aminopeptidase M1 [Source:Projected from Arabidopsis thaliana (AT4G33090) UniProtKB/Swiss-Prot;Acc:Q8VZH2]

Coordinates

chr8:+:51612593..51622350

Molecular Weight (calculated)

99124.0 Da

IEP (calculated)

5.188

GRAVY (calculated)

-0.209

Length

875 amino acids

Sequence
(BLAST)

001: MEKNYDPFKG QSRLPKFAVP KRYDLKLKPD LVTCKFAGAV DISLDVVSPT KFIVLNAAEL SVDPKTVHFK SSNKVFEALE VGLIEEDEIL VVEFGESLPV
101: GFGVLSLAFE GTLNDRMKGF YRSTYEHNGE KRNMAVTQFE PADARRCFPC WDEPACKATF KITLEVPSEL VALSNMPAEE EKVTGNLKTV HYQESPIMST
201: YLVAIVVGLF DYVEDQTSDG IPVRVYCQVG KANQGNFALH VAVKTLPLFK EYFGAPYSLP KLDMIAIPDF AAGAMENYGL VTYRETALLY DDKHSAAANK
301: QRVATVVAHE LAHQWFGNLV TMEWWTHLWL NEGFATWVSY LATDSLFPEW KIWTQFLEEA TEGLRLDGLA ESHPIEVDIN HAGEIDEIFD AISYRKGASV
401: IRMLQSYLGP ESFQRALASY IKKYACSNAK TEDLWSVLQE ESGEPVNKLM NSWTKQQGYP VVSVKINDQK LECEQTQFLL SGSHGDGQWI VPLTLCCGSY
501: EARKSFLMQE KSEALDVKDL LGSSSSNGNP WIKVNVEQTG FYRVKYDDEL SARLRYAIER KVLSTNDKYG ILDDSYALSM ACHQSLSSLL ALMASFREEL
601: DYTVLSNLIS ISYKVARIVA EAVPDLQNHI KLFFINLFQF SAERLGWDPK EGESHLDAML RGELLNALAS FGHGETINEA VRRFRIFLDD RNTAVLPPDL
701: RKAVYVAVMQ RVNKSDRSGF ESLLRIYRET DLSQEKTRIL GSLASCRDPE IILEVLNFLL CSEVRSQDCV YGLAVSFEGR ETAWNWLKEN WDHIHKTFGS
801: GFLLTRFISA TVSPFSSYEK ATEVEEFFAS RTKPYIARTL KQSIERVHIN ANWVQSIEKE KNLPEAVTEL AYRKY

Best Arabidopsis Sequence Match ( AT4G33090.1 )
(BLAST)

001: MDQFKGEPRL PKFAVPKRYD LRLNPDLIAC TFTGTVAIDL DIVADTRFIV LNAADLSVND ASVSFTPPSS SKALAAPKVV LFEEDEILVL EFGEILPHGV
101: GVLKLGFNGV LNDKMKGFYR STYEHNGEKK NMAVTQFEPA DARRCFPCWD EPACKATFKI TLEVPTDLVA LSNMPIMEEK VNGNLKIVSY QESPIMSTYL
201: VAIVVGLFDY VEDHTSDGIK VRVYCQVGKA DQGKFALHVG AKTLDLFKEY FAVPYPLPKM DMIAIPDFAA GAMENYGLVT YRETALLYDE QHSAASNKQR
301: VATVVAHELA HQWFGNLVTM EWWTHLWLNE GFATWVSYLA TDSLFPEWKI WTQFLDESTE GLRLDGLEES HPIEVEVNHA AEIDEIFDAI SYRKGASVIR
401: MLQSYLGAEV FQKSLAAYIK NHAYSNAKTE DLWAALEAGS GEPVNKLMSS WTKQKGYPVV SAKIKDGKLE LEQSRFLSSG SPGEGQWIVP VTLCCGSYEK
501: RKNFLLESKS GAYDLKELLG CSIADGSDKI NGTCSWIKIN VDQAGFYRVK YDDSLAAGLR NATESQSLTS IDRYGILDDS FALTMARQQS LASLLTLCSA
601: YKKELDYTVL SNLIAISYKV VKIGADANQE LMSGIKHFFI GVFQFAAGKL GWDPKQGESH LDAMLRGEVL TALAVFGHDE TLKEAVRRFD AFLADRNTPL
701: LPPDIRRAAY VAVMQRANKS DKSGYESLLR VYRETDLSQE KTRILGSLAS CPDPTIVQDV LNFVLSDEVR NQDALYGLSG VSWEGREVAW KWLQEKWEYI
801: GNTWGSGFLI TRFISAVVSP FASFEKAKEV EEFFATRSKP SMARTLKQSI ERVHINANWV ESIKKEDNLT QLVAQLSSN

Arabidopsis Description

APM1Aminopeptidase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR6]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.