Factsheet for Solyc04g049720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074587	Potato	cytosol	94.3	83.82
VIT_13s0067g03300.t01	Wine grape	cytosol	75.92	67.59
CDX91114	Canola	cytosol	40.81	64.35
Bra023419.1-P	Field mustard	cytosol	70.96	63.07
CDX85643	Canola	cytosol	70.77	62.91
HORVU5Hr1G112530.1	Barley	extracellular	47.43	62.62
Bra008823.1-P	Field mustard	cytosol	70.22	62.22
CDX69635	Canola	cytosol	70.22	62.22
KRG93029	Soybean	nucleus	69.49	61.97
CDY09805	Canola	cytosol	69.3	61.4
HORVU0Hr1G014070.1	Barley	cytosol, plasma membrane, plastid	60.11	59.35
EER93198	Sorghum	cytosol	66.54	59.25
GSMUA_Achr4P16860_001	Banana	cytosol	59.93	59.17
Os03t0819100-01	Rice	cytosol, plasma membrane, plastid	66.36	59.08
Zm00001d034630_P001	Maize	extracellular	65.99	58.76
TraesCS5A01G474300.1	Wheat	cytosol	65.44	58.08
AT5G13520.1	Thale cress	cytosol	65.62	57.95
TraesCS5D01G487100.1	Wheat	cytosol	62.13	55.14
TraesCS5B01G487400.1	Wheat	cytosol	62.13	54.96
Zm00001d017093_P001	Maize	cytosol	21.88	33.24
Zm00001d006252_P001	Maize	peroxisome	21.88	33.06
Zm00001d018463_P001	Maize	peroxisome	21.69	32.78
Zm00001d006253_P001	Maize	peroxisome	21.51	32.5
Zm00001d044280_P001	Maize	peroxisome	21.51	32.5
Solyc08g062630.2.1	Tomato	nucleus, plastid, unclear	18.38	11.43

Protein Annotations

KEGG:00590+3.3.2.6	Gene3D:1.10.1740.60	Gene3D:1.10.390.10	Gene3D:1.25.40.320	MapMan:19.4.5.6.5	Gene3D:2.60.40.1730
InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008237	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0042277	GO:GO:0043171	GO:GO:0070006	InterPro:IPR027268	InterPro:IPR038502	UniProt:K4BRU8
MEROPS:M01.A26	InterPro:M1_LTA-4_hydro/amino_C_sf	InterPro:M1_LTA4H	PFAM:PF01433	PFAM:PF09127	PRINTS:PR00756
PANTHER:PTHR11533	PANTHER:PTHR11533:SF174	InterPro:Peptidase_M1	InterPro:Peptidase_M1_C	InterPro:Peptidase_M1_N	InterPro:Peptidase_M4/M1_CTD_sf
SUPFAM:SSF48371	SUPFAM:SSF55486	SUPFAM:SSF63737	EnsemblPlantsGene:Solyc04g049720.2	EnsemblPlants:Solyc04g049720.2.1	UniParc:UPI0002766823
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:43238577..43243652

Molecular Weight (calculated)

60801.3 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.172

Length

544 amino acids

Sequence
(BLAST)

001: MAPIDPHSFT DSTHPLTTHI SLTFYFDFPS STISSATLVS FSTPYTGPLT LDTRSLSVSS VLDPLSLSPL PFSLSPTDPI LGQSLNISIS KQTHQILILS
101: KTSPSSSALQ WLSPTQTFNK NHPFLYTHCQ PIHARSIFPC QDTPAARVKY TAKLNIPREL SAVMGARHVE RRDPIPSEGG GLCEDEVWCG DDRVVEEFVM
201: EQPIPPYLFA FAIGELGFRE VGPRTRVYAE AVPEVLDAAA TEFAGTEEIV MVGERLFGPY EWERFDLLVL PPSFPLGGME NPRLVFLTPT VIKGDASGSQ
301: VVAHELAHGW TGNLITNKNN EHFWLNEGFT TYAERRIVEA VQGEDIASLN IGIGWMGLVK DVERFKDNME FTKLKTSQAG VDPDEVYSVI PYEKGFQFLQ
401: RIERQIGRPA FDVFLKKYIA TFKFQSIDTD MFLNFLKANV PGIENEIDLK LWTEGTGIPP DAMEPVSNLY SKIVSLANEF KLGRIPREDE VAEWKGQEWE
501: LYLENLPKSV EASQVRALDA LYHLSESKNY EVKAVVEATL AKNV

Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI

Arabidopsis Description

LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.