Factsheet for VIT_13s0067g03300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93029	Soybean	nucleus	77.74	77.87
CDX91114	Canola	cytosol	43.7	77.39
Solyc04g049720.2.1	Tomato	cytosol	67.59	75.92
HORVU5Hr1G112530.1	Barley	extracellular	51.06	75.73
PGSC0003DMT400074587	Potato	cytosol	75.78	75.65
Bra023419.1-P	Field mustard	cytosol	74.63	74.51
CDX85643	Canola	cytosol	74.47	74.35
Bra008823.1-P	Field mustard	cytosol	74.14	73.78
CDX69635	Canola	cytosol	74.14	73.78
CDY09805	Canola	cytosol	73.32	72.96
GSMUA_Achr4P16860_001	Banana	cytosol	63.67	70.6
HORVU0Hr1G014070.1	Barley	cytosol, plasma membrane, plastid	63.18	70.05
Os03t0819100-01	Rice	cytosol, plasma membrane, plastid	69.72	69.72
EER93198	Sorghum	cytosol	69.56	69.56
AT5G13520.1	Thale cress	cytosol	69.89	69.32
Zm00001d034630_P001	Maize	extracellular	69.23	69.23
TraesCS5A01G474300.1	Wheat	cytosol	67.76	67.54
TraesCS5B01G487400.1	Wheat	cytosol	65.79	65.37
TraesCS5D01G487100.1	Wheat	cytosol	65.47	65.25
Zm00001d018463_P001	Maize	peroxisome	20.95	35.56
Zm00001d006252_P001	Maize	peroxisome	20.95	35.56
Zm00001d017093_P001	Maize	cytosol	20.79	35.47
Zm00001d044280_P001	Maize	peroxisome	20.79	35.28
Zm00001d006253_P001	Maize	peroxisome	20.79	35.28
VIT_04s0008g05980.t01	Wine grape	cytosol	4.26	16.15
VIT_09s0002g01900.t01	Wine grape	cytosol	15.71	10.85
VIT_04s0008g01430.t01	Wine grape	cytosol, plasma membrane, plastid	15.55	10.8
VIT_17s0000g09920.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	4.42	7.56

Protein Annotations

KEGG:00590+3.3.2.6	Gene3D:1.10.1740.60	Gene3D:1.10.390.10	Gene3D:1.25.40.320	EntrezGene:100243305	wikigene:100243305
MapMan:19.4.5.6.5	Gene3D:2.60.40.1730	EMBL:AM429286	InterPro:ARM-type_fold	ProteinID:CAN78027	ProteinID:CAN78027.1
ProteinID:CCB49769	ProteinID:CCB49769.1	UniProt:F6HC66	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008237	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042277	GO:GO:0043171	GO:GO:0070006
InterPro:IPR027268	InterPro:IPR038502	EntrezGene:LOC100243305	wikigene:LOC100243305	MEROPS:M01.A26	InterPro:M1_LTA-4_hydro/amino_C_sf
InterPro:M1_LTA4H	PFAM:PF01433	PFAM:PF09127	PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF174
InterPro:Peptidase_M1	InterPro:Peptidase_M1_C	InterPro:Peptidase_M1_N	InterPro:Peptidase_M4/M1_CTD_sf	SMART:SM01263	SUPFAM:SSF48371
SUPFAM:SSF55486	SUPFAM:SSF63737	TIGR:TC59854	TIGR:TC63570	UniParc:UPI0001984740	ArrayExpress:VIT_13s0067g03300
EnsemblPlantsGene:VIT_13s0067g03300	EnsemblPlants:VIT_13s0067g03300.t01	unigene:Vvi.4833	RefSeq:XP_002281209	RefSeq:XP_002281209.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:1817365..1822590

Molecular Weight (calculated)

69047.1 Da

IEP (calculated)

5.318

GRAVY (calculated)

-0.279

Length

611 amino acids

Sequence
(BLAST)

001: MAPLDPHSFT DSTHPFTTHV SLSLYFDFAS STIHASALLS FQNPHTGPIS LDARTLTIVS VTDPVTLAPL PFSLSPPDPI KGCHLTVSLS NHSSILISYS
101: TSPQSSALQW LTPPQTFNKT HPFVYTQCQS IHARSVFPCQ DTPAVRIKYA ARINIPRHLS AVMAARHVER RPPYPGEGWA EVSDSVWCAE GRVVEEFVME
201: QAVPPYLFAF AVGELGHREV GPRTRVYAEA VASLLDAAAR EFAGTEEMIR QGERLFGEYE WERFDLLVLP PSFPYGGMEN PRMVFLTPTV IKGDASGAQV
301: VAHELAHSWT GNLITNKNNE HFWLNEGFTT YAERRIVEAV QGEDRAALNI GIGWRGLNEE MERFKDNMEI TKLKTKQEGV DPDNVYSQVP YEKGFQFLWR
401: IERQIGRPAF DEFLKKYIGT FKFQSIDTDM FLIFLKTNIP GIEKEIDLEM WTEGTGIPPD AYEPVSSIYT RIVSLANEFK LGRMPREDEV ADWQGQEWEL
501: YLENLPKSVE ASQILALDER YRLSESKDYE VKVAFLQLAI LAGCKDYYNE VEKTLKEVGR MKYLRPLYTA LVQGSGKDEQ KIFAKGVFAE AREGYHPIAQ
601: GVVESILTKH L

Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI

Arabidopsis Description

LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.