CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69635	Canola	cytosol	96.74	96.74
Bra008823.1-P	Field mustard	cytosol	96.25	96.25
CDX91114	Canola	cytosol	51.14	91.01
CDX85643	Canola	cytosol	88.76	89.05
AT5G13520.1	Thale cress	cytosol	84.04	83.77
VIT_13s0067g03300.t01	Wine grape	cytosol	72.96	73.32
HORVU5Hr1G112530.1	Barley	extracellular	49.02	73.06
KRG93029	Soybean	nucleus	70.03	70.49
Solyc04g049720.2.1	Tomato	cytosol	61.4	69.3
GSMUA_Achr4P16860_001	Banana	cytosol	61.56	68.6
PGSC0003DMT400074587	Potato	cytosol	67.1	67.32
Os03t0819100-01	Rice	cytosol, plasma membrane, plastid	66.12	66.45
EER93198	Sorghum	cytosol	65.96	66.28
HORVU0Hr1G014070.1	Barley	cytosol, plasma membrane, plastid	58.96	65.7
Zm00001d034630_P001	Maize	extracellular	65.31	65.63
TraesCS5A01G474300.1	Wheat	cytosol	64.01	64.11
TraesCS5D01G487100.1	Wheat	cytosol	61.73	61.83
TraesCS5B01G487400.1	Wheat	cytosol	61.89	61.79
Zm00001d017093_P001	Maize	cytosol	20.52	35.2
Zm00001d006252_P001	Maize	peroxisome	20.36	34.72
Zm00001d018463_P001	Maize	peroxisome	20.2	34.44
Zm00001d044280_P001	Maize	peroxisome	20.03	34.17
Zm00001d006253_P001	Maize	peroxisome	20.03	34.17
CDX68938	Canola	cytosol, plasma membrane, plastid	16.12	11.34
CDX75323	Canola	cytosol, plasma membrane, plastid	16.12	11.34
CDY28282	Canola	cytosol, plasma membrane, plastid	15.64	10.97
CDY45028	Canola	cytosol, plasma membrane, plastid	14.82	10.9
CDY65639	Canola	cytosol	1.3	6.06

Protein Annotations

KEGG:00590+3.3.2.6	Gene3D:1.10.1740.60	Gene3D:1.10.390.10	Gene3D:1.25.40.320	MapMan:19.4.5.6.5	Gene3D:2.60.40.1730
GO:A0A078F5T2	UniProt:A0A078F5T2	InterPro:ARM-type_fold	EnsemblPlants:CDY09805	ProteinID:CDY09805	ProteinID:CDY09805.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006508	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008237	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019370	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00031523001	InterPro:IPR027268	InterPro:IPR038502	InterPro:M1_LTA-4_hydro/amino_C_sf
InterPro:M1_LTA4H	PFAM:PF01433	PFAM:PF09127	PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF174
InterPro:Peptidase_M1	InterPro:Peptidase_M1_C	InterPro:Peptidase_M1_N	InterPro:Peptidase_M4/M1_CTD_sf	SMART:SM01263	SUPFAM:SSF48371
SUPFAM:SSF55486	SUPFAM:SSF63737	UniPathway:UPA00878	UniParc:UPI0004EE2137	SEG:seg	:

Description

BnaC09g43560DBnaC09g43560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5T2]

Coordinates

chrLK031999:-:184295..186650

Molecular Weight (calculated)

68798.1 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.158

Length

614 amino acids

Sequence
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV SLSLYLDFNA STIHASALLS LSSPFSGNLS LDSRSISIKS ILDPQTLIPL HFSVSPSPDP IKGSEVVVVL AGQSQILILY
101: STSPSASALQ WLSPLQTFSK THPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPSPL SAVMSACHVR RRLPVLEEAK HLDALSSVVW CAEDRVVEEF
201: AMEQPIPPYL FAFAVGELGF REVGPRTRVY AESAAGEVLD AAALEFAGTE EMIKQGEKLF GDYEWERFDL LVLPPSFPYG GMENPRMVFL TPTVIKGDAT
301: GAQVVAHELA HSWTGNLITN INNEHFWLNE GFTTYAERRI VEVVQGADIA TLNMGIGWRG LNDEMERFKD NLEFTKLKNK QEGVDPDDVY SQVPYEKGFQ
401: FVLRIERQVG RTAFDEFLKK YIATFKFKSI DTDTFLDFLK ANIPGIEKEI NLQLWTEGVG IPEDAYEPVS AIYTKIISLA EEFKQGKMPS EDEVAEWKGQ
501: EWELYLENLP KSCEPSQVVA LDKRYRLAES KDYEVKVSFL KLAISSKCKG YHGEVEKTLK SVGRMLYLRT LFTALAQTGG TEEKQLAKQI FAEARETYHP
601: IAQGVVESIL SKYI

Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI

Arabidopsis Description

LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.