CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G112530.1	Barley	extracellular	70.43	58.98
CDX85643	Canola	cytosol	94.49	53.27
CDY09805	Canola	cytosol	91.01	51.14
CDX69635	Canola	cytosol	90.72	50.98
AT5G13520.1	Thale cress	cytosol	89.86	50.32
GSMUA_Achr4P16860_001	Banana	cytosol	70.72	44.28
HORVU0Hr1G014070.1	Barley	cytosol, plasma membrane, plastid	70.43	44.1
VIT_13s0067g03300.t01	Wine grape	cytosol	77.39	43.7
KRG93029	Soybean	nucleus	74.2	41.97
Solyc04g049720.2.1	Tomato	cytosol	64.35	40.81
EER93198	Sorghum	cytosol	71.88	40.59
Os03t0819100-01	Rice	cytosol, plasma membrane, plastid	71.88	40.59
Zm00001d034630_P001	Maize	extracellular	71.3	40.26
PGSC0003DMT400074587	Potato	cytosol	71.3	40.2
TraesCS5B01G487400.1	Wheat	cytosol	69.57	39.02
TraesCS5A01G474300.1	Wheat	cytosol	69.28	38.99
TraesCS5D01G487100.1	Wheat	cytosol	68.99	38.83
Zm00001d017093_P001	Maize	cytosol	33.62	32.4
Zm00001d006252_P001	Maize	peroxisome	33.33	31.94
Zm00001d018463_P001	Maize	peroxisome	33.04	31.67
Zm00001d006253_P001	Maize	peroxisome	32.75	31.39
Zm00001d044280_P001	Maize	peroxisome	32.75	31.39
CDY28282	Canola	cytosol, plasma membrane, plastid	16.23	6.4
CDX75323	Canola	cytosol, plasma membrane, plastid	15.94	6.3
CDX68938	Canola	cytosol, plasma membrane, plastid	15.94	6.3
CDY45028	Canola	cytosol, plasma membrane, plastid	14.78	6.11
CDY65639	Canola	cytosol	2.03	5.3

Protein Annotations

KEGG:00590+3.3.2.6	Gene3D:1.10.1740.60	Gene3D:1.10.390.10	Gene3D:1.25.40.320	MapMan:19.4.5.6.5	GO:A0A078DRJ8
InterPro:ARM-type_fold	EnsemblPlants:CDX91114	ProteinID:CDX91114	ProteinID:CDX91114.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006508	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008237
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019370	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00151899001	InterPro:IPR027268	InterPro:IPR038502	InterPro:M1_LTA-4_hydro/amino_C_sf	PFAM:PF01433	PFAM:PF09127
PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF174	InterPro:Peptidase_M1	InterPro:Peptidase_M1_C	InterPro:Peptidase_M1_N
InterPro:Peptidase_M4/M1_CTD_sf	SMART:SM01263	SUPFAM:SSF48371	SUPFAM:SSF55486	UniPathway:UPA00878	UniParc:UPI0004EDFD0A

Description

BnaC02g04830D

Coordinates

chrLK031865:+:838534..840600

Molecular Weight (calculated)

39589.0 Da

IEP (calculated)

4.636

GRAVY (calculated)

-0.398

Length

345 amino acids

Sequence
(BLAST)

001: MIRQGEKLFG EYDWERFDLL VLPPSFPYGG MENPRMVFLT PSVIKGDASG GQVVAHELAH SWTGNLITNI NNEHFWLNEG FTTYAERRIV EVVQGADIAT
101: LNMGIGWRGL KDEMERFKDN LECTKLKNNQ QGVDPDDVYS QVPYEKGFQF VLRIERQVGR TAFDEFLKKY IATFKFKSID TDTFLDFLKA NIPGIEKEIN
201: LELWTESVGI PEDAYEPVST IYTKIISLAE EFKQGKMPSE DEVAEWKGQE WELYLLENLP KSCEPSQVMA LDKRYRLAES KDYEVKVSFS ATRNLIQYLR
301: PLFNALAQSG GTEEKQLAKQ VFAEARETYH PIAQGVVESI LSKFI

Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI

Arabidopsis Description

LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.