Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75323 | Canola | cytosol, plasma membrane, plastid | 18.94 | 2.86 |
| CDX68938 | Canola | cytosol, plasma membrane, plastid | 18.18 | 2.75 |
| CDY45028 | Canola | cytosol, plasma membrane, plastid | 16.67 | 2.63 |
| CDY28282 | Canola | cytosol, plasma membrane, plastid | 17.42 | 2.63 |
| CDX91114 | Canola | cytosol | 5.3 | 2.03 |
| CDX85643 | Canola | cytosol | 8.33 | 1.8 |
| Zm00001d011075_P060 | Maize | mitochondrion | 6.06 | 1.37 |
| CDX69635 | Canola | cytosol | 6.06 | 1.3 |
| CDY09805 | Canola | cytosol | 6.06 | 1.3 |
| KRH52220 | Soybean | mitochondrion | 1.52 | 0.93 |
| Zm00001d042539_P001 | Maize | vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY65639 | EnsemblPlantsGene:GSBRNA2T00046962001 | ProteinID:CDY65639 | ProteinID:CDY65639.1 | SEG:seg | UniParc:UPI0004EE2572 |
| UniProt:A0A078JG25 | MapMan:35.2 | : | : | : | : |
Description
BnaA03g59160DBnaA03g59160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG25]
Coordinates
chrLK034870:+:19289..19687
Molecular Weight (calculated)
15475.7 Da
IEP (calculated)
7.058
GRAVY (calculated)
-0.272
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MYMMIHLQEL SLNTRHIWWR VKWIHCNPLR EENEPPKTLW YGHAERIHDP RATSSFWSLG SMCIFEGKEF VIAGVRSMVK LKWQEGFVEE ISNTKLVESG
101: EFFSGQFVAK KEGEGVGFVR FVVDGIENQR LL
101: EFFSGQFVAK KEGEGVGFVR FVVDGIENQR LL
0001: MNQQNPEEEV SLVNNSGGGG IIEAPAIVEE KEEEGLQQKQ EETIESTDPI LVVVEEKLLE KSVDGEKEDD NSSSSNMEID PVSPATVFCV KLKQPNSNLL
0101: HKMSVPELCR NFSAVAWCGK LNAIACASET CARIPSSKAN TPFWIPIHIL IPERPTECAV FNVVADSPRD SVQFIEWSPT SCPRALLIAN FHGRITIWTQ
0201: PTQGSANLVH DATSWQCEHE WRQDIAVVTK WLTGASPYRW LSSKPSSGTN AKSTFEEKFL SQSSESSARW PNFLCVCSVF SSGSVQIHWS QWPSNQGSTA
0301: PKWFSTKKGL LGAGPSGIMA ADAIITDSGA MHVAGVPIVN PSTIVVWEVT PGPGNGLQAT PKISTGSRVP PSLSSSSWTG FAPLAAYLFS WQEYLISEIK
0401: QGKKPSDQDS SDAISLSCSP VSNFSAYVSP EAAAQSAATT TWGSGVTAVA FDPTRGGSVI AVVIVEGQYM SPYDPDEGPS ITGWRVQRWE SSVQPVVLHQ
0501: IFGNPTSNFG GQVPTQTVWV SRVDMSIPPT KDFKNHQVAA AGPSVDAPKE PDSGDEKANK VVFDPFDLPS DIRTLARIVY SAHGGEIAIA FLRGGVHIFS
0601: GPTFSPVENY QINVGSAIAA PAFSPTSCCS ASVWHDAAKD CAMLKIIRVL PPALPRNQSK VDQSTWERAI AERFWWSLLV GVDWWDAVGC TQSAAEDGIV
0701: SLNSVIAVMD ADFHSLPSTQ HRQQYGPNLD RIKCRLLEGT NAQEVRAMVL DMQARLLLDM LGKGIESALV NPSALVFEPW RVDGETITGI NPEAMAVDPA
0801: LVSSIQAYVD AVLDLASHFI TRLRRYASFC RTLASHAASA GTGSNRNNVT SPTQNASSPA TPQGQPTTTT TTTATTNSSG SSHVQAWMQG AIAKISSSND
0901: GSNSTASPIS GSPTFMPISI NTGTFPGTPA VRLIGDCHFL HRLCQLLLFC FLQRSSRFPQ RNADVSSQKL QTGATSKLEE VNSAKPTPAL NRIEDAQGFR
1001: GAQLGTGVKG IDENSARTTK MGSGNAGQGY TYEEVRVLFH ILMDLCKRTS GLAHPLPGSQ VGSGNIQVRL HYIDGNYTVL PEVVEAALGP HMQNMPRPRG
1101: ADAAGLLLRE LELHPPSEEW HRRNLFGGPG SEPEDMILTD DVSKLSNSLD LPDTNFSGIC DGYNRVHSLW PRKRRMSERD AAFGSNTSVG LGAYLGIMGS
1201: RRDVVTATWK TGLEGVWYKC IRCLRQTSAF ASPGATKQPN PNERETWWTS RWVYCCPMCG GTWVRVV
0101: HKMSVPELCR NFSAVAWCGK LNAIACASET CARIPSSKAN TPFWIPIHIL IPERPTECAV FNVVADSPRD SVQFIEWSPT SCPRALLIAN FHGRITIWTQ
0201: PTQGSANLVH DATSWQCEHE WRQDIAVVTK WLTGASPYRW LSSKPSSGTN AKSTFEEKFL SQSSESSARW PNFLCVCSVF SSGSVQIHWS QWPSNQGSTA
0301: PKWFSTKKGL LGAGPSGIMA ADAIITDSGA MHVAGVPIVN PSTIVVWEVT PGPGNGLQAT PKISTGSRVP PSLSSSSWTG FAPLAAYLFS WQEYLISEIK
0401: QGKKPSDQDS SDAISLSCSP VSNFSAYVSP EAAAQSAATT TWGSGVTAVA FDPTRGGSVI AVVIVEGQYM SPYDPDEGPS ITGWRVQRWE SSVQPVVLHQ
0501: IFGNPTSNFG GQVPTQTVWV SRVDMSIPPT KDFKNHQVAA AGPSVDAPKE PDSGDEKANK VVFDPFDLPS DIRTLARIVY SAHGGEIAIA FLRGGVHIFS
0601: GPTFSPVENY QINVGSAIAA PAFSPTSCCS ASVWHDAAKD CAMLKIIRVL PPALPRNQSK VDQSTWERAI AERFWWSLLV GVDWWDAVGC TQSAAEDGIV
0701: SLNSVIAVMD ADFHSLPSTQ HRQQYGPNLD RIKCRLLEGT NAQEVRAMVL DMQARLLLDM LGKGIESALV NPSALVFEPW RVDGETITGI NPEAMAVDPA
0801: LVSSIQAYVD AVLDLASHFI TRLRRYASFC RTLASHAASA GTGSNRNNVT SPTQNASSPA TPQGQPTTTT TTTATTNSSG SSHVQAWMQG AIAKISSSND
0901: GSNSTASPIS GSPTFMPISI NTGTFPGTPA VRLIGDCHFL HRLCQLLLFC FLQRSSRFPQ RNADVSSQKL QTGATSKLEE VNSAKPTPAL NRIEDAQGFR
1001: GAQLGTGVKG IDENSARTTK MGSGNAGQGY TYEEVRVLFH ILMDLCKRTS GLAHPLPGSQ VGSGNIQVRL HYIDGNYTVL PEVVEAALGP HMQNMPRPRG
1101: ADAAGLLLRE LELHPPSEEW HRRNLFGGPG SEPEDMILTD DVSKLSNSLD LPDTNFSGIC DGYNRVHSLW PRKRRMSERD AAFGSNTSVG LGAYLGIMGS
1201: RRDVVTATWK TGLEGVWYKC IRCLRQTSAF ASPGATKQPN PNERETWWTS RWVYCCPMCG GTWVRVV
Arabidopsis Description
MED16Mediator of RNA polymerase II transcription subunit 16 [Source:UniProtKB/Swiss-Prot;Acc:F4JGZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.