CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023419.1-P	Field mustard	cytosol	98.69	98.69
CDX91114	Canola	cytosol	53.27	94.49
CDX69635	Canola	cytosol	90.03	89.74
CDY09805	Canola	cytosol	89.05	88.76
AT5G13520.1	Thale cress	cytosol	82.68	82.14
VIT_13s0067g03300.t01	Wine grape	cytosol	74.35	74.47
HORVU5Hr1G112530.1	Barley	extracellular	48.2	71.6
Solyc04g049720.2.1	Tomato	cytosol	62.91	70.77
KRG93029	Soybean	nucleus	70.1	70.33
PGSC0003DMT400074587	Potato	cytosol	68.63	68.63
GSMUA_Achr4P16860_001	Banana	cytosol	60.95	67.7
EER93198	Sorghum	cytosol	66.5	66.61
Os03t0819100-01	Rice	cytosol, plasma membrane, plastid	66.18	66.28
Zm00001d034630_P001	Maize	extracellular	65.52	65.63
HORVU0Hr1G014070.1	Barley	cytosol, plasma membrane, plastid	58.99	65.52
TraesCS5A01G474300.1	Wheat	cytosol	64.05	63.95
TraesCS5D01G487100.1	Wheat	cytosol	61.27	61.17
TraesCS5B01G487400.1	Wheat	cytosol	61.44	61.14
Zm00001d017093_P001	Maize	cytosol	19.93	34.08
Zm00001d006252_P001	Maize	peroxisome	19.77	33.61
Zm00001d018463_P001	Maize	peroxisome	19.61	33.33
Zm00001d006253_P001	Maize	peroxisome	19.44	33.06
Zm00001d044280_P001	Maize	peroxisome	19.44	33.06
CDX75323	Canola	cytosol, plasma membrane, plastid	15.69	11.0
CDY28282	Canola	cytosol, plasma membrane, plastid	15.69	10.97
CDX68938	Canola	cytosol, plasma membrane, plastid	15.52	10.88
CDY45028	Canola	cytosol, plasma membrane, plastid	14.71	10.78
CDY65639	Canola	cytosol	1.8	8.33

Protein Annotations

KEGG:00590+3.3.2.6	Gene3D:1.10.1740.60	Gene3D:1.10.390.10	Gene3D:1.25.40.320	MapMan:19.4.5.6.5	Gene3D:2.60.40.1730
GO:A0A078DEB6	InterPro:ARM-type_fold	EnsemblPlants:CDX85643	ProteinID:CDX85643	ProteinID:CDX85643.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006508	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008237	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019370
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00143375001	InterPro:IPR027268	InterPro:IPR038502	InterPro:M1_LTA-4_hydro/amino_C_sf	InterPro:M1_LTA4H
PFAM:PF01433	PFAM:PF09127	PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF174	InterPro:Peptidase_M1
InterPro:Peptidase_M1_C	InterPro:Peptidase_M1_N	InterPro:Peptidase_M4/M1_CTD_sf	SMART:SM01263	SUPFAM:SSF48371	SUPFAM:SSF55486
SUPFAM:SSF63737	UniPathway:UPA00878	UniParc:UPI0004EEB700	SEG:seg	:	:

Description

BnaA02g01700D

Coordinates

chrLK031842:+:987685..990903

Molecular Weight (calculated)

68892.0 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.236

Length

612 amino acids

Sequence
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV SLSLYLSFPT STIHASALLT LSSPFSGTLS LDSRSLSLSS ILDPKTLSPL PHSLSPTPDP IRGTEISVVL SGQSQILIIY
101: STSPAASALQ WLSPPQTFSK THPYVYTQCQ AIHARSIFPC QDTPARRIRY DVVMNIPASL SAVMSARHVR RRLPLPEEAT HLDSSLCWCA EDRVVEEFVM
201: EQPIPPYLFA FAVGELAFRE VGPRTRVYAE SAAVEVLDAA EVEFAGTEEM IRQGEKLFGE YDWERFDLLV LPPSFPYGGM ENPRMVFLTP TVIKGDASGG
301: QVVAHELAHS WTGNLITNVN NEHFWLNEGF TTYAERRIVE VVQGVDIATL NMGIGWRGLK DEMERFKDNL ECTKLKNNQQ GVDPDDVYSQ VPYEKGFQFV
401: LRIERQVGRT AFDEFLKKYI ATFKFKSIDT DTFLEFLKAN IPGIEKEINL ELWTEGVGIP EDAYEPVSTI YTKIISLAEE FKQGKMPSED EVAEWKGQEW
501: ELYLENLPKS CEPSQVIALD KRYRLAESKD YEVKVSFLQV AISSKCREYH GEVEKTLKTV GRMKYLRPLF NALAQSGGTE EKQLAKQVFA EARETYHPIA
601: QGVVESILSK YI

Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI

Arabidopsis Description

LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.