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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER93198 Sorghum cytosol 92.64 92.64
HORVU5Hr1G112530.1 Barley extracellular 62.03 91.99
HORVU0Hr1G014070.1 Barley cytosol, plasma membrane, plastid 81.51 90.38
TraesCS5A01G474300.1 Wheat cytosol 89.03 88.74
TraesCS5D01G487100.1 Wheat cytosol 84.45 84.18
TraesCS5B01G487400.1 Wheat cytosol 84.12 83.58
CDX91114 Canola cytosol 40.59 71.88
KRG93029 Soybean nucleus 70.38 70.49
VIT_13s0067g03300.t01 Wine grape cytosol 69.72 69.72
GSMUA_Achr4P16860_001 Banana cytosol 62.68 69.51
CDX69635 Canola cytosol 66.94 66.61
Bra008823.1-P Field mustard cytosol 66.94 66.61
Solyc04g049720.2.1 Tomato cytosol 59.08 66.36
CDX85643 Canola cytosol 66.28 66.18
Bra023419.1-P Field mustard cytosol 66.28 66.18
CDY09805 Canola cytosol 66.45 66.12
PGSC0003DMT400074587 Potato cytosol 65.96 65.85
AT5G13520.1 Thale cress cytosol 63.99 63.47
Zm00001d017093_P001 Maize cytosol 24.55 41.9
Zm00001d018463_P001 Maize peroxisome 24.22 41.11
Zm00001d006253_P001 Maize peroxisome 24.06 40.83
Zm00001d044280_P001 Maize peroxisome 24.06 40.83
Zm00001d006252_P001 Maize peroxisome 23.9 40.56
Os02t0218200-01 Rice plasma membrane, plastid 15.88 11.05
Os09t0362500-01 Rice plasma membrane 15.38 10.8
Os08t0398700-01 Rice plasma membrane 15.38 10.74
Os09t0362800-02 Rice cytosol 1.47 2.31
Protein Annotations
KEGG:00590+3.3.2.6Gene3D:1.10.1740.60Gene3D:1.10.390.10Gene3D:1.25.40.320MapMan:19.4.5.6.5Gene3D:2.60.40.1730
EntrezGene:4334583ProteinID:AAO65874.1ProteinID:ABF99571.1EMBL:AK073744InterPro:ARM-type_foldProteinID:BAF13624.1
ProteinID:BAS87073.1ProteinID:EAZ29074.1GO:GO:0003674GO:GO:0003824GO:GO:0004301GO:GO:0004463
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0006508GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008237
GO:GO:0008270GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016787GO:GO:0019370
GO:GO:0019538GO:GO:0042277GO:GO:0043171GO:GO:0046872GO:GO:0070006InterPro:IPR027268
InterPro:IPR038502MEROPS:M01.A26InterPro:M1_LTA-4_hydro/amino_C_sfInterPro:M1_LTA4HEnsemblPlantsGene:Os03g0819100EnsemblPlants:Os03t0819100-01
PFAM:PF01433PFAM:PF09127PRINTS:PR00756PANTHER:PTHR11533PANTHER:PTHR11533:SF174InterPro:Peptidase_M1
InterPro:Peptidase_M1_CInterPro:Peptidase_M1_NInterPro:Peptidase_M4/M1_CTD_sfUniProt:Q84TA3SMART:SM01263SUPFAM:SSF48371
SUPFAM:SSF55486SUPFAM:SSF63737UniParc:UPI00000560DERefSeq:XP_015632326.1SEG:seg:
Description
LKHA4Peptidase M1, membrane alanine aminopeptidase family protein. (Os03t0819100-01)
Coordinates
chr3:+:34378157..34382354
Molecular Weight (calculated)
67795.4 Da
IEP (calculated)
4.781
GRAVY (calculated)
-0.186
Length
611 amino acids
Sequence
(BLAST)
001: MPPVDPHSYT DGDHPVTAKA ALAFYLDFAA STIHASALLT LSAPHSGDLL LDTRALAVHS ASTASGPPSP IPFSLADAAD PVLGSALTLT LPPDTTSFLL
101: TFSTSPSASA LQWLSPPQTA SSLPFVFSQC QSIHARSVFP CHDTPAARIT FDLLLNVPTQ LSAVAAARHV SRRDPLPSDH RGACDDALWC APGRIVEEFQ
201: MEQSVPPYLF AFAAGGIGFR DLGPRTRVYA EGGDKVLDEA AREFAGVEEM VKVGESLFGP YEWERFDLLV LPPSFPYGGM ENPRMVFLTP TVIKGDAAGA
301: QVVAHELAHS WTGNLITNKT NEDFWLNEGF TTYAERRIVE VVQGEERAAL NMGIGWRGLN RMMERFKDNM EYTKLKPKMA GIDPDDVYSE VPYEKGFQFL
401: WRIERQIGRP AFDEFLKNYI STFKFKSIDT ETFLEFLKTN VPGIENQIDL QLWIEGTGIP PDAMEPESAI YKKICSLAAE FKSGKLPSED EVADWSGQEW
501: ELYLENLPTD VEASQVTALD ERYKLSESCD YEVKVAFLQL AIPTGCRCYF NEVEKCLKQV GRMKYLRPLY SSLARCSGEE KMLAHRIFSE AHEFYHPIAR
601: SVAESILSKH G
Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)
001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI
Arabidopsis Description
LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.