CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g03300.t01	Wine grape	cytosol	77.87	77.74
HORVU5Hr1G112530.1	Barley	extracellular	51.64	76.46
CDX91114	Canola	cytosol	41.97	74.2
HORVU0Hr1G014070.1	Barley	cytosol, plasma membrane, plastid	64.92	71.87
Bra008823.1-P	Field mustard	cytosol	71.48	71.01
CDX69635	Canola	cytosol	71.48	71.01
Os03t0819100-01	Rice	cytosol, plasma membrane, plastid	70.49	70.38
GSMUA_Achr4P16860_001	Banana	cytosol	63.44	70.24
EER93198	Sorghum	cytosol	70.33	70.21
CDX85643	Canola	cytosol	70.33	70.1
Bra023419.1-P	Field mustard	cytosol	70.33	70.1
CDY09805	Canola	cytosol	70.49	70.03
Solyc04g049720.2.1	Tomato	cytosol	61.97	69.49
Zm00001d034630_P001	Maize	extracellular	69.51	69.39
PGSC0003DMT400074587	Potato	cytosol	69.51	69.28
TraesCS5A01G474300.1	Wheat	cytosol	69.18	68.84
AT5G13520.1	Thale cress	cytosol	66.89	66.23
TraesCS5D01G487100.1	Wheat	cytosol	66.56	66.23
TraesCS5B01G487400.1	Wheat	cytosol	66.39	65.85
Zm00001d017093_P001	Maize	cytosol	20.66	35.2
Zm00001d044280_P001	Maize	peroxisome	20.33	34.44
Zm00001d006252_P001	Maize	peroxisome	20.16	34.17
Zm00001d006253_P001	Maize	peroxisome	20.16	34.17
Zm00001d018463_P001	Maize	peroxisome	20.16	34.17
KRH08282	Soybean	cytosol, endoplasmic reticulum, plasma membrane	11.64	24.57
KRH39126	Soybean	cytosol, extracellular, plastid	4.75	11.89
KRH52219	Soybean	cytosol, plasma membrane, plastid	16.07	11.23
KRH61539	Soybean	cytosol	16.39	11.11
KRH06096	Soybean	extracellular, golgi	0.82	7.46
KRH47528	Soybean	cytosol	5.9	7.05
KRH52220	Soybean	mitochondrion	1.97	5.61
KRH61543	Soybean	cytosol	0.16	1.14

Protein Annotations

KEGG:00590+3.3.2.6	Gene3D:1.10.1740.60	Gene3D:1.10.390.10	Gene3D:1.25.40.320	EntrezGene:100807911	MapMan:19.4.5.6.5
Gene3D:2.60.40.1730	EMBL:ACUP02012778	InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_20G244100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008237	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042277	GO:GO:0043171	GO:GO:0070006
UniProt:I1NJ89	InterPro:IPR027268	InterPro:IPR038502	EnsemblPlants:KRG93029	ProteinID:KRG93029	ProteinID:KRG93029.1
InterPro:M1_LTA-4_hydro/amino_C_sf	InterPro:M1_LTA4H	PFAM:PF01433	PFAM:PF09127	PRINTS:PR00756	PANTHER:PTHR11533
PANTHER:PTHR11533:SF174	InterPro:Peptidase_M1	InterPro:Peptidase_M1_C	InterPro:Peptidase_M1_N	InterPro:Peptidase_M4/M1_CTD_sf	SMART:SM01263
SUPFAM:SSF48371	SUPFAM:SSF55486	SUPFAM:SSF63737	UniParc:UPI000233DE2F	:	:

Description

hypothetical protein

Coordinates

chr20:-:47429944..47433224

Molecular Weight (calculated)

68550.0 Da

IEP (calculated)

5.615

GRAVY (calculated)

-0.311

Length

610 amino acids

Sequence
(BLAST)

001: MAAVDPHSFT DSRQAGTRHV ALSLYLDLPS STIHASALFS LQTSHSGPFY LDTRSLTIHS VIHPKTQTPI PFSLSDPDPI KGSLLSFTLS DHSSFLISYS
101: TSPSSSALQW LLPPQSSHPF VYTQCQSIHA RSVFPCQDTP ALRIQYSALL NVPSQLSAVM AARHVERRSP KHDDAVHVVL PDGESWCAQG RIVEEFVMEQ
201: SVPPYLFAFA VGELGNREVG PRTRVYAENA AAVLDSAAAE FAGTEDMIRE GEKLFGPYEW ERFDLLVLPP SFPYGGMENP RMVFLTPTVI KGDATGAQVV
301: AHELAHSWTG NLITNKTNEH FWLNEGFTTY AERRIVEAVQ GEQRAALNIG IGWRGLNEDV ERFKDNLEFT KLKNNQEGID PDNVYSQVPY EKGFQFLWRI
401: ERQVGRPAFD EFLKKYIATF KFKSIDTETF LDFLKANIPG IENQIDLLLW TEGTGIPPDA YEPESTAYKT IVSLANEFTN GRMPREDEVA GWQGQEWELY
501: LDNLPKSIEA SQVIDLDSRY KLSESKDYEV KVSFLQRAIS CGCKTYYNEV EKTLKGVGRM KYLRPLYTAL VKGSGKEDGK VFAKRIFSEA RECYHPIAQG
601: VVEAIFAKHL

Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)

001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI

Arabidopsis Description

LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.