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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • plastid 2
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034630_P001 Maize extracellular 96.73 96.73
Os03t0819100-01 Rice cytosol, plasma membrane, plastid 92.64 92.64
HORVU5Hr1G112530.1 Barley extracellular 62.03 91.99
HORVU0Hr1G014070.1 Barley cytosol, plasma membrane, plastid 81.51 90.38
TraesCS5A01G474300.1 Wheat cytosol 89.03 88.74
TraesCS5D01G487100.1 Wheat cytosol 84.62 84.34
TraesCS5B01G487400.1 Wheat cytosol 84.45 83.9
CDX91114 Canola cytosol 40.59 71.88
GSMUA_Achr4P16860_001 Banana cytosol 64.16 71.14
KRG93029 Soybean nucleus 70.21 70.33
VIT_13s0067g03300.t01 Wine grape cytosol 69.56 69.56
Bra023419.1-P Field mustard cytosol 66.78 66.67
Solyc04g049720.2.1 Tomato cytosol 59.25 66.54
CDX85643 Canola cytosol 66.61 66.5
CDX69635 Canola cytosol 66.78 66.45
Bra008823.1-P Field mustard cytosol 66.78 66.45
CDY09805 Canola cytosol 66.28 65.96
PGSC0003DMT400074587 Potato cytosol 65.14 65.03
AT5G13520.1 Thale cress cytosol 62.85 62.34
EES04750 Sorghum cytosol 16.37 11.35
KXG25106 Sorghum plasma membrane 16.2 11.3
KXG35481 Sorghum plastid 16.37 9.89
Protein Annotations
KEGG:00590+3.3.2.6Gene3D:1.10.1740.60Gene3D:1.10.390.10Gene3D:1.25.40.320MapMan:19.4.5.6.5Gene3D:2.60.40.1730
EntrezGene:8057373InterPro:ARM-type_foldUniProt:C5WV27EnsemblPlants:EER93198ProteinID:EER93198ProteinID:EER93198.1
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008237
GO:GO:0008270GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0042277
GO:GO:0043171GO:GO:0070006InterPro:IPR027268InterPro:IPR038502InterPro:M1_LTA-4_hydro/amino_C_sfInterPro:M1_LTA4H
PFAM:PF01433PFAM:PF09127PRINTS:PR00756PANTHER:PTHR11533PANTHER:PTHR11533:SF174InterPro:Peptidase_M1
InterPro:Peptidase_M1_CInterPro:Peptidase_M1_NInterPro:Peptidase_M4/M1_CTD_sfSMART:SM01263EnsemblPlantsGene:SORBI_3001G036300SUPFAM:SSF48371
SUPFAM:SSF55486SUPFAM:SSF63737unigene:Sbi.5890UniParc:UPI0001A82985RefSeq:XP_002466200.1SEG:seg
Description
hypothetical protein
Coordinates
chr1:-:2707859..2716150
Molecular Weight (calculated)
67856.3 Da
IEP (calculated)
4.687
GRAVY (calculated)
-0.221
Length
611 amino acids
Sequence
(BLAST)
001: MAPVDPHSYT DGAHPVVSRA ALAFYLDFAA STIHASALLT LSAPHSGDLL LDTRALTVHS ASTDADTPEP IPFSLAAAPD PVLGTALTLT LPPDTTSFRL
101: TFSTSPAASA LQWLAPPQTA SGQPFVFSQC QSIHARSIFP CHDTPAARIT FSLLLNVPEQ LSAVASARHV ARRDPLPSDH RGACDDELWC APGRIVEEFQ
201: MEQSVPPYLF AFAAGGIGSR DLGPRTRVYA EGGDKVLDEA AREFAGVEEM VKVGEGLFGP YEWERFDLLV LPPSFPYGGM ENPRMVFLTP TVIKGDAAGA
301: QVVAHELAHS WTGNLITNKT NEDFWLNEGF TTYAERRIVE VVQGEERAAL NMGIGWRGLN RMMERFKDNM EFTKLKPNMA GIDPDDVYSE VPYEKGFQFL
401: WRIEREIGRP AFDEFLKKYI ATFKFQSIDT ETFLEFLKTN VPGIENQIDL NLWVEGTGIP PDAMEPDSAT YKKICSLAAE FKSGKLPSED EVANWSGQEW
501: ELYLENLPTD VEASQVTALD ERYKLSESRD YEVKVAFLQL AIPTGCKCYF NEVEKCLKQV GRMKYLRPLY SSLAKCSSEE KMLAQRIFSE AQEFYHPIAR
601: SVAESILSKH S
Best Arabidopsis Sequence Match ( AT5G13520.1 )
(BLAST)
001: MAPIDPHSFT DSSHPLTTHV ALSLYLDFNT SIIHGSALLT LSSAFSGELS LDTRCISIAM VLDPLTLEPI PYSVSTTPDR IRGTEVVVVL SGQSSLLIVY
101: STSPSASALQ WLSPLQTFSK LHPYVYTQCQ AIHARSIFPC QDTPAARIRY DVVMNIPNSL SAVMSARHVR RRLAVPEEAK HLEAGSLGSS LWCGEDRVVE
201: EFAMEQPIPP YLFAFAVGEL GFREVGPRTR VYTESAAIEV LDAAALEFAG TEDMIKQGEK LFGDYEWERF DLLVLPPSFP YGGMENPRMV FLTPTVIKGD
301: ATGAQVVAHE LAHSWTGNLI TNINNEHFWL NEGFTTYAER RIVEVVQGAD IATLNIGIGW RGLTDEMERF KDNLECTKLW NKQEGVDPDD VYSQVPYEKG
401: FQFVLRIERQ IGRTAFDEFL KKYIATFKFK SIDTNTFLEF LKANIPGIEK EINLQLWTEG VGIPEDAYEP VSTIYTKIIS LAKEFKEGKM PSEDDVAEWN
501: GQEWELYLEN LPKSCEPSQV MALDKRYRLA ESKDYEVKVS FLQLAVTSKC REYHGEVKKT LKEVGRMKYL RPLFTALAQS GGTEEKQLAK QVFAEARETY
601: HPIAQGVVES ILSKYI
Arabidopsis Description
LKHA4Leukotriene A-4 hydrolase homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.