Factsheet for VIT_04s0008g01430.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular	15.68	81.66
PGSC0003DMT400021155	Potato	cytosol	77.5	77.94
Solyc08g062630.2.1	Tomato	nucleus, plastid, unclear	77.39	77.83
AT4G33090.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	77.05	77.13
CDX75323	Canola	cytosol, plasma membrane, plastid	75.68	76.29
Bra011412.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	75.57	76.17
CDX68938	Canola	cytosol, plasma membrane, plastid	75.45	76.06
Bra034547.1-P	Field mustard	cytosol, plasma membrane, plastid	73.75	74.51
CDY45028	Canola	cytosol, plasma membrane, plastid	70.34	74.13
CDY28282	Canola	cytosol, plasma membrane, plastid	73.52	73.94
GSMUA_Achr10P...	Banana	cytosol	33.86	70.78
GSMUA_Achr10P...	Banana	mitochondrion	38.3	68.08
VIT_09s0002g01900.t01	Wine grape	cytosol	60.23	59.89
VIT_04s0008g05980.t01	Wine grape	cytosol	7.5	40.99
VIT_17s0000g09920.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	14.66	36.13
VIT_13s0067g03300.t01	Wine grape	cytosol	10.8	15.55

Protein Annotations

Gene3D:1.10.390.60	Gene3D:1.25.50.20	EntrezGene:100264544	wikigene:100264544	MapMan:19.4.5.6.5	Gene3D:2.60.40.1730
Gene3D:2.60.40.1910	EMBL:AM431949	ProteinID:CAN73668	ProteinID:CAN73668.1	ProteinID:CBI20680	ProteinID:CBI20680.3
UniProt:D7STT1	InterPro:ERAP1-like_C_dom	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004177
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008237	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0042277	GO:GO:0043171	GO:GO:0046872
GO:GO:0070006	EntrezGene:LOC100264544	wikigene:LOC100264544	MEROPS:M01.A25	InterPro:M1_APN-typ	PFAM:PF01433
PFAM:PF11838	PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF183	InterPro:Peptidase_M1	InterPro:Peptidase_M1_N
SUPFAM:SSF55486	SUPFAM:SSF63737	TIGR:TC55807	UniParc:UPI000198312F	ArrayExpress:VIT_04s0008g01430	EnsemblPlantsGene:VIT_04s0008g01430
EnsemblPlants:VIT_04s0008g01430.t01	unigene:Vvi.57	RefSeq:XP_002280239	RefSeq:XP_002280239.1	SEG:seg	:

Description

Aminopeptidase [Source:UniProtKB/TrEMBL;Acc:D7STT1]

Coordinates

chr4:-:1184373..1193195

Molecular Weight (calculated)

98917.7 Da

IEP (calculated)

5.026

GRAVY (calculated)

-0.148

Length

880 amino acids

Sequence
(BLAST)

001: MEQFRGQPRL PKFAVPKRYD IHLEPDLVAC KFAGSVQIDL DIVDATNFIV LNAADLSVAH NAVSFKSQTS SKVFEPSKVE IVEEDEILVL EFSEVLPLEM
101: GVLAIGFEGT LNDKMKGFYR STFEHNGEKR NMAVTQFEPA DARRCFPCWD EPACKATFKI TLDVPSDLIA LSNMPVIEEK PNGHLKTVSY QESPIMSTYL
201: VAVVIGLFDY VEDHTPDGIK VRVYCQVGKA DQGKFALDVA VKTLGLYKEY FACPYSLPKL DMIAIPDFAA GAMENYGLVT YRETALLYDE KHSAAANKQR
301: VATVVAHELA HQWFGNLVTM EWWTHLWLNE GFATWVSYLA ADSLFPEWKV WTQFLDESTE GLRLDGLAES HPIEVEINHA GEIDEIFDAI SYRKGASVIR
401: MLQSYLGAEC FQRSLASYIK KHACSNAKTE DLWAALEEGS GEPVNRLMNS WTKQKGYPVV SVKINNQKLE FEQTQFLSSG SQGDGQWIVP ITLCCGSYDT
501: PHNFLLQTKS ESLDMKEFLG CCVGGGNDNS IAVCSWIKLN VDQTGFYRVK YDEKLAAGLR SAIEKNYLSA TDRFGILDDS FALCMACQQS LTSLLTLMGA
601: YREELDYTVL SNLISISYKV ARIAADATPE LVDYIKEFFI SLFQYSAEKL GWEPRPGEGH LDAMLRGEVL TALAVFGHDL TINEASRRFH AFLDDRNTPV
701: LPPDIRKAAY VAVMQNVTTS NRSGYESLLR VYRETDLSQE KTRILGSLAS CPDPNIVLEV LNFVLSSEVR SQDAVFGLAV SREGRETAWS WLKNNWDYIS
801: KTWGSGFLIT RFVSAIVSPF ASFEKASEVQ EFFATRTKPS IARTLKQSIE RVHINAKWVE SIQNEKHLAD AMKELAYRKY

Best Arabidopsis Sequence Match ( AT4G33090.1 )
(BLAST)

001: MDQFKGEPRL PKFAVPKRYD LRLNPDLIAC TFTGTVAIDL DIVADTRFIV LNAADLSVND ASVSFTPPSS SKALAAPKVV LFEEDEILVL EFGEILPHGV
101: GVLKLGFNGV LNDKMKGFYR STYEHNGEKK NMAVTQFEPA DARRCFPCWD EPACKATFKI TLEVPTDLVA LSNMPIMEEK VNGNLKIVSY QESPIMSTYL
201: VAIVVGLFDY VEDHTSDGIK VRVYCQVGKA DQGKFALHVG AKTLDLFKEY FAVPYPLPKM DMIAIPDFAA GAMENYGLVT YRETALLYDE QHSAASNKQR
301: VATVVAHELA HQWFGNLVTM EWWTHLWLNE GFATWVSYLA TDSLFPEWKI WTQFLDESTE GLRLDGLEES HPIEVEVNHA AEIDEIFDAI SYRKGASVIR
401: MLQSYLGAEV FQKSLAAYIK NHAYSNAKTE DLWAALEAGS GEPVNKLMSS WTKQKGYPVV SAKIKDGKLE LEQSRFLSSG SPGEGQWIVP VTLCCGSYEK
501: RKNFLLESKS GAYDLKELLG CSIADGSDKI NGTCSWIKIN VDQAGFYRVK YDDSLAAGLR NATESQSLTS IDRYGILDDS FALTMARQQS LASLLTLCSA
601: YKKELDYTVL SNLIAISYKV VKIGADANQE LMSGIKHFFI GVFQFAAGKL GWDPKQGESH LDAMLRGEVL TALAVFGHDE TLKEAVRRFD AFLADRNTPL
701: LPPDIRRAAY VAVMQRANKS DKSGYESLLR VYRETDLSQE KTRILGSLAS CPDPTIVQDV LNFVLSDEVR NQDALYGLSG VSWEGREVAW KWLQEKWEYI
801: GNTWGSGFLI TRFISAVVSP FASFEKAKEV EEFFATRSKP SMARTLKQSI ERVHINANWV ESIKKEDNLT QLVAQLSSN

Arabidopsis Description

APM1Aminopeptidase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR6]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.