Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78293 | Canola | nucleus | 96.38 | 96.38 |
| CDY65235 | Canola | nucleus | 77.83 | 84.31 |
| AT5G07460.1 | Thale cress | cytosol | 81.0 | 82.11 |
| CDX70041 | Canola | nucleus | 71.95 | 77.94 |
| CDX81054 | Canola | cytosol | 25.34 | 70.89 |
| CDX78295 | Canola | cytosol | 57.92 | 69.57 |
| CDX81053 | Canola | cytosol, nucleus, plastid | 57.92 | 69.57 |
| CDX78294 | Canola | cytosol | 57.47 | 69.02 |
| CDX81055 | Canola | cytosol | 57.47 | 69.02 |
| CDY67000 | Canola | cytosol | 57.47 | 69.02 |
| CDX81056 | Canola | cytosol | 56.56 | 67.93 |
| CDX81057 | Canola | cytosol | 56.56 | 67.93 |
| CDX70042 | Canola | cytosol | 61.99 | 67.82 |
| CDY65236 | Canola | nucleus | 61.09 | 66.83 |
| KRH46170 | Soybean | nucleus | 59.28 | 64.53 |
| CDY41436 | Canola | cytosol, nucleus, plastid | 21.72 | 63.16 |
| CDX92678 | Canola | plastid | 60.63 | 52.76 |
| CDY11057 | Canola | plastid | 59.73 | 51.97 |
| KRH14408 | Soybean | nucleus | 61.54 | 51.13 |
| KRH73738 | Soybean | nucleus | 61.54 | 51.13 |
| CDY23047 | Canola | endoplasmic reticulum, extracellular | 45.7 | 50.5 |
| CDY34344 | Canola | plastid | 57.01 | 49.22 |
| CDY02125 | Canola | nucleus | 45.25 | 49.02 |
| CDY03378 | Canola | plastid | 56.56 | 48.83 |
| KRG98772 | Soybean | cytosol, plastid | 58.82 | 48.69 |
| CDY54549 | Canola | vacuole | 30.32 | 26.8 |
| CDY30332 | Canola | vacuole | 29.86 | 26.4 |
Protein Annotations
| EnsemblPlants:CDX81052 | EnsemblPlantsGene:GSBRNA2T00134490001 | Gene3D:3.30.1060.10 | GO:A0A078CWG1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008113 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0055114 | HAMAP:MF_01401 | InterPro:IPR036509 |
| InterPro:Met_Sox_Rdtase_MsrA | InterPro:Met_Sox_Rdtase_MsrA_sf | PANTHER:PTHR42799 | PANTHER:PTHR42799:SF9 | PFAM:PF01625 | ProteinID:CDX81052 |
| ProteinID:CDX81052.1 | SUPFAM:SSF55068 | TIGRFAMs:TIGR00401 | UniParc:UPI0004EDE20A | MapMan:50.1.8 | : |
Description
BnaC03g03060D
Coordinates
chrLK031823:-:1489695..1491060
Molecular Weight (calculated)
24820.9 Da
IEP (calculated)
4.758
GRAVY (calculated)
-0.656
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIAQEDS KLLNTATTDP SPIAQEEPQL VDQPVIVPSP IAQEPDNDLP APGSEFAEFA AGCFWGLELA FQRIPGVTET EVGYTHGVSH NPSYEVVRTN
101: KTNHAEVVRV QYNPNECSYE TLLDLFWSRH DPTTLNRQGE LVGAQYRSGI YFYTPEQEKL AHESLENQQT KLEKKIVTEI LPAKKFYKAE EYHQHYLAKG
201: GMYGNAQSPA KSCKDPIRCY G
101: KTNHAEVVRV QYNPNECSYE TLLDLFWSRH DPTTLNRQGE LVGAQYRSGI YFYTPEQEKL AHESLENQQT KLEKKIVTEI LPAKKFYKAE EYHQHYLAKG
201: GMYGNAQSPA KSCKDPIRCY G
001: MDSSLKTQEP QVVETSPSPV AQEPPQVADK PAIVPSPIAQ EPDNDVPAPG NEFAEFAAGC FWGVELAFQR IPGVTVTEVG YTHGISHNPS YEDVCTNTTN
101: HAEVVRVQYD PKECTYETLL DLFWSRHNPT TLNRQGELLG AQYRSGIYFY TPEQEKLARE SLEKEQKKLE DKIVTEILPA KKFYKAEEYH QQYLVKGGMH
201: GNAQSPAKSC KDPIRCYG
101: HAEVVRVQYD PKECTYETLL DLFWSRHNPT TLNRQGELLG AQYRSGIYFY TPEQEKLARE SLEKEQKKLE DKIVTEILPA KKFYKAEEYH QQYLVKGGMH
201: GNAQSPAKSC KDPIRCYG
Arabidopsis Description
MRSA2PMSR2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.