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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 7
  • nucleus 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH73738 Soybean nucleus 95.49 95.49
KRH46170 Soybean nucleus 64.29 84.24
VIT_16s0013g00620.t01 Wine grape nucleus 63.91 82.52
GSMUA_Achr11P... Banana cytosol 60.15 78.43
PGSC0003DMT400054153 Potato cytosol 59.02 76.96
HORVU1Hr1G055520.1 Barley cytosol 56.39 76.53
GSMUA_Achr11P... Banana cytosol, mitochondrion 58.27 76.35
CDX81054 Canola cytosol 22.56 75.95
KRG98772 Soybean cytosol, plastid 75.19 74.91
AT5G07470.1 Thale cress cytosol 56.77 74.75
Bra005938.1-P Field mustard cytosol 51.5 74.46
Bra005937.1-P Field mustard cytosol 51.13 73.91
CDY67000 Canola cytosol 51.13 73.91
CDX78294 Canola cytosol 51.13 73.91
CDX78295 Canola cytosol 51.13 73.91
CDX81055 Canola cytosol 51.13 73.91
CDX81056 Canola cytosol 51.13 73.91
Bra005939.1-P Field mustard cytosol 51.13 73.51
Bra005940.1-P Field mustard cytosol 50.75 73.37
CDX81053 Canola cytosol, nucleus, plastid 50.75 73.37
CDX81057 Canola cytosol 50.75 73.37
CDX70042 Canola cytosol 54.51 71.78
Bra009260.1-P Field mustard cytosol 54.14 71.29
CDY65236 Canola nucleus 53.76 70.79
Bra012934.1-P Field mustard cytosol 33.46 68.46
Solyc06g034020.2.1 Tomato plastid 60.15 67.51
CDY65235 Canola nucleus 51.5 67.16
PGSC0003DMT400055589 Potato nucleus 59.02 67.09
Bra009261.1-P Field mustard nucleus 51.13 66.67
CDX70041 Canola nucleus 51.13 66.67
AT5G07460.1 Thale cress cytosol 53.76 65.6
Solyc03g093690.2.1 Tomato plastid 62.41 64.59
AT5G61640.2 Thale cress plasma membrane 55.26 64.19
Zm00001d029965_P001 Maize plastid 62.41 64.09
KRH63671 Soybean cytosol 46.24 63.4
Bra040258.1-P Field mustard nucleus 12.78 62.96
EER94474 Sorghum plastid 60.15 62.75
CDX78293 Canola nucleus 51.88 62.44
CDX81052 Canola cytosol, mitochondrion, nucleus 51.13 61.54
TraesCS1D01G219100.1 Wheat plastid 60.15 61.3
Os10t0563600-01 Rice plastid 60.15 60.84
TraesCS1A01G217300.1 Wheat golgi, plastid 59.02 60.15
TraesCS1B01G230500.1 Wheat plastid 59.4 60.08
GSMUA_Achr5P18310_001 Banana golgi, mitochondrion, plastid 59.02 56.68
CDY23047 Canola endoplasmic reticulum, extracellular 42.11 56.0
CDY02125 Canola nucleus 42.86 55.88
CDY41436 Canola cytosol, nucleus, plastid 15.79 55.26
Bra016336.1-P Field mustard cytosol, nucleus, plastid 15.79 55.26
Bra005936.1-P Field mustard cytosol 51.88 52.47
KRH08095 Soybean endoplasmic reticulum 26.69 28.4
KRH69798 Soybean endoplasmic reticulum 26.32 28.0
Protein Annotations
EntrezGene:100804748Gene3D:3.30.1060.10MapMan:50.1.8EMBL:ACUP02008501EnsemblPlantsGene:GLYMA_14G023900GO:GO:0003674
GO:GO:0003824GO:GO:0008113GO:GO:0008150GO:GO:0008152GO:GO:0055114UniProt:I1M6R8
InterPro:IPR036509EnsemblPlants:KRH14408ProteinID:KRH14408ProteinID:KRH14408.1ProteinID:KRH14409.1HAMAP:MF_01401
InterPro:Met_Sox_Rdtase_MsrAInterPro:Met_Sox_Rdtase_MsrA_sfPFAM:PF01625PANTHER:PTHR42799PANTHER:PTHR42799:SF4SUPFAM:SSF55068
TIGRFAMs:TIGR00401UniParc:UPI00023D4537SEG:seg:::
Description
hypothetical protein
Coordinates
chr14:+:1708408..1710870
Molecular Weight (calculated)
29693.0 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.524
Length
266 amino acids
Sequence
(BLAST)
001: MLLKCLAAIS SSYTTTSNSL LVFASSSLSS PAKTKFLPSL SRFSVKRLCF LSQTRPHISV NKPSMNLLNR LGFGSARAPE NMDSSIPQGP DDDIPAPGQQ
101: FAEFGAGCFW GVELAFQRVP GVTKTEVGYT QGLVHNPTYE DVCTGTTNHS EVVRVQYDPK ICSYETLLDV FWARHDPTTL NRQGNDVGTQ YRSGIYYYTP
201: EQEKAAKESL EQQQKQLNRK IVTEILPAKK FYRAEEYHQQ YLEKGGRSGF KQSASKGCND PIRCYG
Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)
001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG
Arabidopsis Description
MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.