Factsheet for PGSC0003DMT400054153

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g00620.t01	Wine grape	nucleus	80.39	79.61
Solyc03g093690.2.1	Tomato	plastid	98.53	78.21
GSMUA_Achr11P...	Banana	cytosol	75.49	75.49
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	72.55	72.91
HORVU1Hr1G055520.1	Barley	cytosol	69.61	72.45
KRH46170	Soybean	nucleus	71.57	71.92
PGSC0003DMT400055589	Potato	nucleus	78.92	68.8
EER94474	Sorghum	plastid	75.49	60.39
CDY03378	Canola	plastid	75.0	59.77
CDX92678	Canola	plastid	74.02	59.45
CDY34344	Canola	plastid	74.51	59.38
KRH73738	Soybean	nucleus	76.96	59.02
KRH14408	Soybean	nucleus	76.96	59.02
Bra013865.1-P	Field mustard	plastid	73.53	58.59
Os10t0563600-01	Rice	plastid	75.49	58.56
CDY11057	Canola	plastid	72.55	58.27
AT4G25130.1	Thale cress	plastid	73.53	58.14
Bra019187.1-P	Field mustard	plastid	71.57	57.48
PGSC0003DMT400039382	Potato	cytosol, nucleus, plastid	54.9	57.44
Zm00001d029965_P001	Maize	plastid	72.55	57.14
TraesCS1A01G217300.1	Wheat	golgi, plastid	73.04	57.09
TraesCS1D01G219100.1	Wheat	plastid	73.04	57.09
TraesCS1B01G230500.1	Wheat	plastid	72.06	55.89
KRG98772	Soybean	cytosol, plastid	72.06	55.06
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	72.55	53.43
PGSC0003DMT400026994	Potato	cytosol	31.86	25.0
PGSC0003DMT400009346	Potato	endoplasmic reticulum	29.41	21.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400054153	EnsemblPlantsGene:PGSC0003DMG400021003	Gene3D:3.30.1060.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113
GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	HAMAP:MF_01401	InterPro:IPR036509	InterPro:Met_Sox_Rdtase_MsrA
InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	PFAM:PF01625	PGSC:PGSC0003DMG400021003	SUPFAM:SSF55068
TIGRFAMs:TIGR00401	UniParc:UPI000294E765	UniProt:M1BVX1	MapMan:50.1.8	:	:

Description

Peptide methionine sulfoxide reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400021003]

Coordinates

chr3:-:37485657..37490276

Molecular Weight (calculated)

23167.9 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.687

Length

204 amino acids

Sequence
(BLAST)

001: MSWLNKLGFG ARTDTPMDSS SSAIPQGPDT DIPAPGQQFV QFGAGCFWGV ELAFQRVPGV TKTEVGYSQG YLDNPTYEDI CSGNTFHSEI VRVQYDSKEC
101: NFDTLLDVFW DRHDPTTLNR QGNDVGTQYR SGIYFYTPEQ EKAALEARDR QQKILNRNIV SEILPAKKFY RAEEYHQQYL AKGGRFGFRQ SVEKGCNDPI
201: RCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.