Factsheet for VIT_16s0013g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	80.58	81.37
PGSC0003DMT400054153	Potato	cytosol	79.61	80.39
KRH46170	Soybean	nucleus	77.67	78.82
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	76.7	77.83
HORVU1Hr1G055520.1	Barley	cytosol	70.87	74.49
PGSC0003DMT400055589	Potato	nucleus	79.61	70.09
Solyc06g034020.2.1	Tomato	plastid	80.1	69.62
VIT_17s0000g09780.t01	Wine grape	cytosol	60.19	65.26
Solyc03g093690.2.1	Tomato	plastid	81.07	64.98
KRH14408	Soybean	nucleus	82.52	63.91
EER94474	Sorghum	plastid	78.16	63.14
KRH73738	Soybean	nucleus	81.07	62.78
Zm00001d029965_P001	Maize	plastid	78.16	62.16
CDX92678	Canola	plastid	75.73	61.42
CDY03378	Canola	plastid	75.73	60.94
CDY34344	Canola	plastid	75.24	60.55
CDY11057	Canola	plastid	74.27	60.24
Bra013865.1-P	Field mustard	plastid	74.76	60.16
TraesCS1A01G217300.1	Wheat	golgi, plastid	76.21	60.15
TraesCS1D01G219100.1	Wheat	plastid	76.21	60.15
Os10t0563600-01	Rice	plastid	76.7	60.08
KRG98772	Soybean	cytosol, plastid	77.18	59.55
Bra019187.1-P	Field mustard	plastid	73.3	59.45
VIT_03s0088g00730.t01	Wine grape	cytosol	18.45	59.38
TraesCS1B01G230500.1	Wheat	plastid	75.24	58.94
AT4G25130.1	Thale cress	plastid	73.3	58.53
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	78.64	58.48
VIT_14s0006g02610.t01	Wine grape	cytosol	33.98	27.34
VIT_04s0023g03200.t01	Wine grape	golgi	27.67	22.62

Protein Annotations

EntrezGene:100258013	wikigene:100258013	Gene3D:3.30.1060.10	MapMan:50.1.8	ProteinID:CBI38576	ProteinID:CBI38576.3
UniProt:D7U762	EMBL:FN596738	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006979	GO:GO:0008113	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0055114
InterPro:IPR036509	EntrezGene:LOC100258013	wikigene:LOC100258013	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf
PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068	TIGR:TC60396	TIGRFAMs:TIGR00401
UniParc:UPI00015C86CF	ArrayExpress:VIT_16s0013g00620	EnsemblPlantsGene:VIT_16s0013g00620	EnsemblPlants:VIT_16s0013g00620.t01	unigene:Vvi.7004	RefSeq:XP_002281325
RefSeq:XP_002281325.1	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:5831477..5839230

Molecular Weight (calculated)

23125.9 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.716

Length

206 amino acids

Sequence
(BLAST)

001: MSWLGKLGFG ARTPPEPSLD PHSSAIAQGP DDDLPAPGQQ FAQFGAGCFW GVELAFQRVS GVTKTEVGYT QGFVHNPTYN DVCSGTTNHS EVVRVQYDPK
101: ECGYGALLDV FWARHDPTTL NRQGNDVGTQ YRSGIYFYTP EQEKAARESL EQHQKLMNRK IVTEILPAKK FYRAEEYHQQ YLEKGGRFGF KQSSEKGCND
201: PIRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.