CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25130.1	CDY32970	AT5G42980.1	15352244
AT4G25130.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34344	Canola	plastid	98.83	98.83
Bra013865.1-P	Field mustard	plastid	98.05	98.05
VIT_16s0013g00620.t01	Wine grape	nucleus	60.94	75.73
PGSC0003DMT400054153	Potato	cytosol	59.77	75.0
CDY11057	Canola	plastid	73.83	74.41
AT4G25130.1	Thale cress	plastid	73.83	73.26
GSMUA_Achr11P...	Banana	cytosol	57.81	72.55
CDX92678	Canola	plastid	71.88	72.44
CDX78295	Canola	cytosol	50.39	70.11
CDY67000	Canola	cytosol	50.0	69.57
HORVU1Hr1G055520.1	Barley	cytosol	53.12	69.39
CDX70042	Canola	cytosol	54.69	69.31
CDX81055	Canola	cytosol	49.61	69.02
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	54.69	68.97
CDX81053	Canola	cytosol, nucleus, plastid	49.22	68.48
CDX81054	Canola	cytosol	21.09	68.35
CDX81056	Canola	cytosol	48.83	67.93
CDX81057	Canola	cytosol	48.83	67.93
CDX78294	Canola	cytosol	48.83	67.93
CDY65236	Canola	nucleus	53.52	67.82
Solyc06g034020.2.1	Tomato	plastid	61.33	66.24
PGSC0003DMT400055589	Potato	nucleus	59.77	65.38
Solyc03g093690.2.1	Tomato	plastid	64.84	64.59
CDY65235	Canola	nucleus	48.44	60.78
EER94474	Sorghum	plastid	60.55	60.78
CDX70041	Canola	nucleus	48.05	60.29
Zm00001d029965_P001	Maize	plastid	58.98	58.3
CDX78293	Canola	nucleus	50.0	57.92
TraesCS1A01G217300.1	Wheat	golgi, plastid	58.59	57.47
Os10t0563600-01	Rice	plastid	58.98	57.41
TraesCS1D01G219100.1	Wheat	plastid	58.2	57.09
CDX81052	Canola	cytosol, mitochondrion, nucleus	48.83	56.56
TraesCS1B01G230500.1	Wheat	plastid	57.42	55.89
CDY02125	Canola	nucleus	44.14	55.39
CDY23047	Canola	endoplasmic reticulum, extracellular	42.58	54.5
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	57.81	53.43
CDY41436	Canola	cytosol, nucleus, plastid	14.84	50.0
CDY54549	Canola	vacuole	26.56	27.2
CDY30332	Canola	vacuole	26.56	27.2

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:A0A078EUX7	EnsemblPlants:CDY03378	ProteinID:CDY03378	ProteinID:CDY03378.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00116012001	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf
PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EE9591
SEG:seg	:	:	:	:	:

Description

BnaC01g17040D

Coordinates

chrLK031943:+:68239..69660

Molecular Weight (calculated)

28380.5 Da

IEP (calculated)

9.026

GRAVY (calculated)

-0.536

Length

256 amino acids

Sequence
(BLAST)

001: MLSIVASPPV ISAASLSKPL QSLSKAALSL SKRAKPISPF PKTARSISVY KSPMNNLFTR LGFGSRPQPD PASAAIAQGP DDDVPSPGQQ FAQFGAGCFW
101: GAELAYQRVP GVTKTEVGYS HGFVDNPTYE DVCSETTGHN EIVRVQYDPK EVSFESLLDV FWKRHDPTTL NRQGNDVGTR YRSGIYFYTD EQEKLAREAM
201: EKQQKILNRK IVTEILPATK FYRAENYHQQ YLAKGGRMGL SQSAEKGCND PIRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.