CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012934.1-P	Field mustard	cytosol	60.29	94.62
CDY23047	Canola	endoplasmic reticulum, extracellular	67.16	68.5
CDX70042	Canola	cytosol	59.8	60.4
CDY65236	Canola	nucleus	58.33	58.91
CDX81055	Canola	cytosol	50.98	56.52
CDX78295	Canola	cytosol	50.98	56.52
CDX78294	Canola	cytosol	50.98	56.52
CDX81053	Canola	cytosol, nucleus, plastid	50.49	55.98
CDX81057	Canola	cytosol	50.49	55.98
KRH46170	Soybean	nucleus	55.39	55.66
CDY67000	Canola	cytosol	50.0	55.43
AT5G61640.2	Thale cress	plasma membrane	61.76	55.02
CDX81056	Canola	cytosol	49.51	54.89
CDX70041	Canola	nucleus	51.96	51.96
CDY65235	Canola	nucleus	51.96	51.96
CDX78293	Canola	nucleus	49.51	45.7
CDX81052	Canola	cytosol, mitochondrion, nucleus	49.02	45.25
CDX92678	Canola	plastid	55.88	44.88
CDY11057	Canola	plastid	55.39	44.49
CDY03378	Canola	plastid	55.39	44.14
CDY34344	Canola	plastid	55.39	44.14
KRH73738	Soybean	nucleus	56.86	43.61
CDY41436	Canola	cytosol, nucleus, plastid	16.18	43.42
CDX81054	Canola	cytosol	16.67	43.04
KRH14408	Soybean	nucleus	55.88	42.86
KRG98772	Soybean	cytosol, plastid	54.9	41.95
CDY54549	Canola	vacuole	25.98	21.2
CDY30332	Canola	vacuole	25.49	20.8

Protein Annotations

EnsemblPlants:CDY02125	EnsemblPlantsGene:GSBRNA2T00113517001	Gene3D:3.30.1060.10	GO:A0A078EJ89	GO:GO:0003674	GO:GO:0003824
GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	HAMAP:MF_01401	InterPro:IPR036509
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	PFAM:PF01625	ProteinID:CDY02125
ProteinID:CDY02125.1	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EF36DF	MapMan:50.1.8	:

Description

BnaA03g40420D

Coordinates

chrLK031932:-:262443..263960

Molecular Weight (calculated)

23341.4 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.638

Length

204 amino acids

Sequence
(BLAST)

001: MDFSTSLGPF VTIVNRKLKY KTNAKFCTYF GPDTDASASG NQFAQFAAGS FWSVELVYQR VPGIPRDKLI SHKKFNETLT NDACSGTSNH VEVVRNQYDL
101: KECRFESLLE LFWWSMHDPT TLNRQGNNVG SQYRSGIYYY NPEQEKLARE SLEYIGRKIV TEILPATKFY RAEEDNQQYL SKGGRFGLKQ SSAKGCNDPI
201: RCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.