CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81056	Canola	cytosol	97.47	41.85
CDX78294	Canola	cytosol	97.47	41.85
CDX81053	Canola	cytosol, nucleus, plastid	97.47	41.85
CDY67000	Canola	cytosol	96.2	41.3
Bra005939.1-P	Field mustard	cytosol	96.2	41.08
CDX81057	Canola	cytosol	94.94	40.76
CDX78295	Canola	cytosol	94.94	40.76
CDX81055	Canola	cytosol	93.67	40.22
CDX70042	Canola	cytosol	75.95	29.7
CDY65236	Canola	nucleus	75.95	29.7
CDY65235	Canola	nucleus	75.95	29.41
CDX70041	Canola	nucleus	74.68	28.92
AT5G07470.1	Thale cress	cytosol	72.15	28.22
KRH46170	Soybean	nucleus	69.62	27.09
CDX78293	Canola	nucleus	72.15	25.79
CDX81052	Canola	cytosol, mitochondrion, nucleus	70.89	25.34
KRH14408	Soybean	nucleus	75.95	22.56
KRH73738	Soybean	nucleus	74.68	22.18
CDY34344	Canola	plastid	69.62	21.48
CDX92678	Canola	plastid	68.35	21.26
CDY03378	Canola	plastid	68.35	21.09
CDY11057	Canola	plastid	67.09	20.87
KRG98772	Soybean	cytosol, plastid	65.82	19.48
CDY23047	Canola	endoplasmic reticulum, extracellular	43.04	17.0
CDY02125	Canola	nucleus	43.04	16.67
CDY54549	Canola	vacuole	35.44	11.2
CDY30332	Canola	vacuole	34.18	10.8
CDY41436	Canola	cytosol, nucleus, plastid	3.8	3.95

Protein Annotations

EnsemblPlants:CDX81054	EnsemblPlantsGene:GSBRNA2T00134492001	Gene3D:3.30.1060.10	GO:A0A078CYL0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:IPR036509	InterPro:Met_Sox_Rdtase_MsrA
InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF9	PFAM:PF01625	ProteinID:CDX81054	ProteinID:CDX81054.1
SUPFAM:SSF55068	UniParc:UPI0004EE5456	MapMan:50.1.8	:	:	:

Description

BnaC03g03080D

Coordinates

chrLK031823:-:1495060..1496014

Molecular Weight (calculated)

8679.9 Da

IEP (calculated)

4.150

GRAVY (calculated)

-0.357

Length

79 amino acids

Sequence
(BLAST)

1: MNLSSITQGN DNDVPAPGNE FAQFAAGCFW GVELAFQRVS GVTHTEVGYT QGFLHNPSYE DICTNTTNHA EIVRVQYDP

Best Arabidopsis Sequence Match ( AT5G07460.1 )
(BLAST)

001: MDSSLKTQEP QVVETSPSPV AQEPPQVADK PAIVPSPIAQ EPDNDVPAPG NEFAEFAAGC FWGVELAFQR IPGVTVTEVG YTHGISHNPS YEDVCTNTTN
101: HAEVVRVQYD PKECTYETLL DLFWSRHNPT TLNRQGELLG AQYRSGIYFY TPEQEKLARE SLEKEQKKLE DKIVTEILPA KKFYKAEEYH QQYLVKGGMH
201: GNAQSPAKSC KDPIRCYG

Arabidopsis Description

MRSA2PMSR2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.