CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11057	Canola	plastid	90.16	90.16
VIT_16s0013g00620.t01	Wine grape	nucleus	61.42	75.73
PGSC0003DMT400054153	Potato	cytosol	59.45	74.02
GSMUA_Achr11P...	Banana	cytosol	59.45	74.02
HORVU1Hr1G055520.1	Barley	cytosol	57.09	73.98
CDY34344	Canola	plastid	72.44	71.88
CDY03378	Canola	plastid	72.44	71.88
CDY67000	Canola	cytosol	51.57	71.2
CDX78295	Canola	cytosol	51.57	71.2
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	56.69	70.94
CDX81055	Canola	cytosol	51.18	70.65
CDX81056	Canola	cytosol	50.79	70.11
CDX81057	Canola	cytosol	50.79	70.11
CDX81053	Canola	cytosol, nucleus, plastid	50.39	69.57
CDX78294	Canola	cytosol	50.39	69.57
Solyc06g034020.2.1	Tomato	plastid	63.78	68.35
CDX81054	Canola	cytosol	21.26	68.35
CDX70042	Canola	cytosol	54.33	68.32
CDY65236	Canola	nucleus	53.54	67.33
PGSC0003DMT400055589	Potato	nucleus	61.02	66.24
Solyc03g093690.2.1	Tomato	plastid	65.35	64.59
CDX70041	Canola	nucleus	50.79	63.24
CDY65235	Canola	nucleus	50.79	63.24
CDX78293	Canola	nucleus	53.94	61.99
EER94474	Sorghum	plastid	62.2	61.96
CDX81052	Canola	cytosol, mitochondrion, nucleus	52.76	60.63
Zm00001d029965_P001	Maize	plastid	60.63	59.46
TraesCS1A01G217300.1	Wheat	golgi, plastid	60.63	59.0
TraesCS1D01G219100.1	Wheat	plastid	60.24	58.62
Os10t0563600-01	Rice	plastid	60.63	58.56
TraesCS1B01G230500.1	Wheat	plastid	59.45	57.41
CDY02125	Canola	nucleus	44.88	55.88
CDY23047	Canola	endoplasmic reticulum, extracellular	42.52	54.0
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	58.66	53.79
CDY41436	Canola	cytosol, nucleus, plastid	15.75	52.63
CDY54549	Canola	vacuole	25.59	26.0
CDY30332	Canola	vacuole	25.59	26.0

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:A0A078DZH2	EnsemblPlants:CDX92678	ProteinID:CDX92678	ProteinID:CDX92678.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00154489001	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625
PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EF13E4	SEG:seg

Description

BnaC07g39360D

Coordinates

chrLK031873:-:298747..299913

Molecular Weight (calculated)

28366.4 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.609

Length

254 amino acids

Sequence
(BLAST)

001: MPAPVASSPV ISAASLSIPL RSLSKAAHPL FKPVSPFPKT ARSTISVYKP PMNNLFNRLG YGSRSQQDPS SAAIAQGPDD DVPSPGQQFA QFGAGCFWGL
101: ELAYQRVPGV TKTEVGYSHG FVHNPIYEDV CTGMTGHNEV VRVQYDPKEC SFENLLDVFW NRHDPTTLNR QGNDVGTQYR SGIYYYTDEQ EKFARESLEK
201: QEKILNKKIV TEILPAKKFY RAEEYHQQYL AKGGSMGRRQ SAEKGCNDPI RCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.