CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70041	Canola	nucleus	88.73	88.73
AT5G07460.1	Thale cress	cytosol	84.8	79.36
CDX78293	Canola	nucleus	85.29	78.73
CDX81052	Canola	cytosol, mitochondrion, nucleus	84.31	77.83
CDX81054	Canola	cytosol	29.41	75.95
CDX78295	Canola	cytosol	65.2	72.28
CDY67000	Canola	cytosol	64.71	71.74
CDX81053	Canola	cytosol, nucleus, plastid	64.71	71.74
CDX81055	Canola	cytosol	64.22	71.2
CDX81056	Canola	cytosol	63.73	70.65
CDX78294	Canola	cytosol	63.73	70.65
CDX81057	Canola	cytosol	63.24	70.11
CDY41436	Canola	cytosol, nucleus, plastid	25.98	69.74
CDX70042	Canola	cytosol	68.63	69.31
CDY65236	Canola	nucleus	67.65	68.32
KRH46170	Soybean	nucleus	64.71	65.02
CDY23047	Canola	endoplasmic reticulum, extracellular	51.96	53.0
CDY02125	Canola	nucleus	51.96	51.96
KRH14408	Soybean	nucleus	67.16	51.5
CDY11057	Canola	plastid	63.24	50.79
CDX92678	Canola	plastid	63.24	50.79
KRH73738	Soybean	nucleus	66.18	50.75
KRG98772	Soybean	cytosol, plastid	64.22	49.06
CDY34344	Canola	plastid	61.27	48.83
CDY03378	Canola	plastid	60.78	48.44
CDY54549	Canola	vacuole	32.35	26.4
CDY30332	Canola	vacuole	31.86	26.0

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:A0A078JFK1	UniProt:A0A078JFK1	EnsemblPlants:CDY65235	ProteinID:CDY65235
ProteinID:CDY65235.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00045445001	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf
PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF9	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EB3C4D

Description

BnaC09g47880DBnaC09g47880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFK1]

Coordinates

chrLK034703:-:9303..10296

Molecular Weight (calculated)

22836.5 Da

IEP (calculated)

5.324

GRAVY (calculated)

-0.718

Length

204 amino acids

Sequence
(BLAST)

001: MGSSSTAQEE PQLVDTPAIV PSPLAQEPDN DVPAPGNQFA EFAAGCFWGV ELAYQRIPGV TETEVGYTQG ISHNPSYKDV CTNTTNHAEV VRVQYDPNEC
101: TYETLLDLFW SRHDPTTLNR QGKLVGAQYR SGIYFYTPEQ EKLARESLEN QQKKLEKKIV SEILPAKKFY KAEEYHQHYL SKGEKSGHAQ SPAKSCKDPI
201: SCFG

Best Arabidopsis Sequence Match ( AT5G07460.1 )
(BLAST)

001: MDSSLKTQEP QVVETSPSPV AQEPPQVADK PAIVPSPIAQ EPDNDVPAPG NEFAEFAAGC FWGVELAFQR IPGVTVTEVG YTHGISHNPS YEDVCTNTTN
101: HAEVVRVQYD PKECTYETLL DLFWSRHNPT TLNRQGELLG AQYRSGIYFY TPEQEKLARE SLEKEQKKLE DKIVTEILPA KKFYKAEEYH QQYLVKGGMH
201: GNAQSPAKSC KDPIRCYG

Arabidopsis Description

MRSA2PMSR2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.