CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009261.1-P	Field mustard	nucleus	99.02	99.02
CDY65235	Canola	nucleus	88.73	88.73
CDX81054	Canola	cytosol	28.92	74.68
AT5G07460.1	Thale cress	cytosol	78.92	73.85
CDX78293	Canola	nucleus	78.43	72.4
CDX81052	Canola	cytosol, mitochondrion, nucleus	77.94	71.95
CDX78295	Canola	cytosol	64.22	71.2
CDX81053	Canola	cytosol, nucleus, plastid	63.73	70.65
CDY67000	Canola	cytosol	63.73	70.65
CDX81055	Canola	cytosol	63.24	70.11
CDY41436	Canola	cytosol, nucleus, plastid	25.98	69.74
CDX78294	Canola	cytosol	62.75	69.57
CDX81056	Canola	cytosol	62.75	69.57
CDX81057	Canola	cytosol	62.25	69.02
CDX70042	Canola	cytosol	67.16	67.82
CDY65236	Canola	nucleus	66.18	66.83
KRH46170	Soybean	nucleus	64.22	64.53
CDY02125	Canola	nucleus	51.96	51.96
CDY23047	Canola	endoplasmic reticulum, extracellular	50.49	51.5
KRH14408	Soybean	nucleus	66.67	51.13
CDY11057	Canola	plastid	63.24	50.79
CDX92678	Canola	plastid	63.24	50.79
KRH73738	Soybean	nucleus	65.69	50.38
KRG98772	Soybean	cytosol, plastid	63.73	48.69
CDY34344	Canola	plastid	60.78	48.44
CDY03378	Canola	plastid	60.29	48.05
CDY54549	Canola	vacuole	32.84	26.8
CDY30332	Canola	vacuole	32.35	26.4

Protein Annotations

EnsemblPlants:CDX70041	EnsemblPlantsGene:GSBRNA2T00136139001	Gene3D:3.30.1060.10	GO:A0A078BZD6	GO:GO:0003674	GO:GO:0003824
GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	HAMAP:MF_01401	InterPro:IPR036509
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF9	PFAM:PF01625	ProteinID:CDX70041
ProteinID:CDX70041.1	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EE4579	MapMan:50.1.8	:

Description

BnaA10g23900D

Coordinates

chrLK031790:-:2824931..2825944

Molecular Weight (calculated)

22896.6 Da

IEP (calculated)

5.324

GRAVY (calculated)

-0.700

Length

204 amino acids

Sequence
(BLAST)

001: MGSYSTAQEE PQLVDTPAIV PSPLAQEPDN DVPAPGNQFA EFAAGCFWGV ELAYQRIPGV TETEVGYTQG ISHNPSYKDV CTNTTNHAEV VRVQYDPNEC
101: TYETLLDLFW SRHDPTTLNR QGKLVGAQYR SGIYFFTPEQ EKLARESLEN QQKKLEKKIV SEILPAKKFY KAEEYHQHYL SKGEKSGHAQ SPAKSCKDPI
201: SCFG

Best Arabidopsis Sequence Match ( AT5G07460.1 )
(BLAST)

001: MDSSLKTQEP QVVETSPSPV AQEPPQVADK PAIVPSPIAQ EPDNDVPAPG NEFAEFAAGC FWGVELAFQR IPGVTVTEVG YTHGISHNPS YEDVCTNTTN
101: HAEVVRVQYD PKECTYETLL DLFWSRHNPT TLNRQGELLG AQYRSGIYFY TPEQEKLARE SLEKEQKKLE DKIVTEILPA KKFYKAEEYH QQYLVKGGMH
201: GNAQSPAKSC KDPIRCYG

Arabidopsis Description

MRSA2PMSR2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.