CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14408	Soybean	nucleus	95.49	95.49
KRH46170	Soybean	nucleus	63.53	83.25
VIT_16s0013g00620.t01	Wine grape	nucleus	62.78	81.07
GSMUA_Achr11P...	Banana	cytosol	59.77	77.94
PGSC0003DMT400054153	Potato	cytosol	59.02	76.96
HORVU1Hr1G055520.1	Barley	cytosol	56.02	76.02
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	57.89	75.86
AT5G07470.1	Thale cress	cytosol	57.52	75.74
CDX81054	Canola	cytosol	22.18	74.68
KRG98772	Soybean	cytosol, plastid	74.81	74.53
Bra005938.1-P	Field mustard	cytosol	51.13	73.91
Bra005937.1-P	Field mustard	cytosol	50.75	73.37
CDY67000	Canola	cytosol	50.75	73.37
CDX78294	Canola	cytosol	50.75	73.37
CDX78295	Canola	cytosol	50.75	73.37
CDX81053	Canola	cytosol, nucleus, plastid	50.75	73.37
CDX81055	Canola	cytosol	50.75	73.37
CDX81056	Canola	cytosol	50.75	73.37
Bra005939.1-P	Field mustard	cytosol	50.75	72.97
Bra005940.1-P	Field mustard	cytosol	50.38	72.83
CDX81057	Canola	cytosol	50.38	72.83
CDX70042	Canola	cytosol	54.89	72.28
Bra009260.1-P	Field mustard	cytosol	54.51	71.78
CDY65236	Canola	nucleus	54.14	71.29
Bra012934.1-P	Field mustard	cytosol	34.21	70.0
Solyc06g034020.2.1	Tomato	plastid	59.77	67.09
PGSC0003DMT400055589	Potato	nucleus	58.27	66.24
CDY65235	Canola	nucleus	50.75	66.18
Bra009261.1-P	Field mustard	nucleus	50.38	65.69
CDX70041	Canola	nucleus	50.38	65.69
AT5G07460.1	Thale cress	cytosol	53.38	65.14
AT5G61640.2	Thale cress	plasma membrane	55.64	64.63
Solyc03g093690.2.1	Tomato	plastid	62.41	64.59
Zm00001d029965_P001	Maize	plastid	62.41	64.09
KRH63671	Soybean	cytosol	46.24	63.4
CDX78293	Canola	nucleus	51.88	62.44
EER94474	Sorghum	plastid	59.77	62.35
CDX81052	Canola	cytosol, mitochondrion, nucleus	51.13	61.54
Bra040258.1-P	Field mustard	nucleus	12.41	61.11
TraesCS1D01G219100.1	Wheat	plastid	59.02	60.15
Os10t0563600-01	Rice	plastid	59.02	59.7
TraesCS1A01G217300.1	Wheat	golgi, plastid	58.27	59.39
TraesCS1B01G230500.1	Wheat	plastid	58.65	59.32
CDY23047	Canola	endoplasmic reticulum, extracellular	42.86	57.0
CDY02125	Canola	nucleus	43.61	56.86
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	57.89	55.6
CDY41436	Canola	cytosol, nucleus, plastid	15.41	53.95
Bra016336.1-P	Field mustard	cytosol, nucleus, plastid	15.41	53.95
Bra005936.1-P	Field mustard	cytosol	51.88	52.47
KRH69798	Soybean	endoplasmic reticulum	25.94	27.6
KRH08095	Soybean	endoplasmic reticulum	25.56	27.2

Protein Annotations

EntrezGene:100792638	Gene3D:3.30.1060.10	MapMan:50.1.8	EMBL:ACUP02001288	EnsemblPlantsGene:GLYMA_02G290800	GO:GO:0003674
GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	UniProt:I1JJ90
InterPro:IPR036509	EnsemblPlants:KRH73738	ProteinID:KRH73738	ProteinID:KRH73738.1	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA
InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068	TIGRFAMs:TIGR00401
UniParc:UPI00023BC159	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:47032515..47035272

Molecular Weight (calculated)

29874.2 Da

IEP (calculated)

8.716

GRAVY (calculated)

-0.570

Length

266 amino acids

Sequence
(BLAST)

001: MLIKCLAAIS SSYTTTSNSL LVFASSSLSS PAKTKFLPSL SRFSVKRPYF LSQTYPRIAV NKPSMNLLNR LGFGSARATE NMDSSIPQGP DDDIPAPGQQ
101: FAEFGAGCFW GVELAFQRVP GVTKTEVGYT QGLVHNPTYE DVCTGTTNHS EVVRIQYDPK NCSYETLLDM FWSRHDPTTL NRQGNDVGTQ YRSGIYYYTP
201: EQEKAAKESL EQQQKQLNRK IVTEILPAKK FYRAEEYHQQ YLEKGGRFGF KQSASKGCND PIRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.