CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g09780.t01	Wine grape	cytosol	74.74	76.32
Solyc03g111720.2.1	Tomato	extracellular, plastid	72.16	71.43
PGSC0003DMT400039382	Potato	cytosol, nucleus, plastid	71.65	71.28
VIT_03s0088g00730.t01	Wine grape	cytosol	22.16	67.19
GSMUA_Achr2P05990_001	Banana	cytosol	65.46	66.49
KRH46170	Soybean	nucleus	61.34	58.62
KRH14408	Soybean	nucleus	63.4	46.24
KRH73738	Soybean	nucleus	63.4	46.24
KRG98772	Soybean	cytosol, plastid	59.79	43.45
KRH69798	Soybean	endoplasmic reticulum	32.99	25.6
KRH08095	Soybean	endoplasmic reticulum	31.44	24.4

Protein Annotations

EntrezGene:100527085	Gene3D:3.30.1060.10	MapMan:50.1.8	EMBL:ACUP02002705	EMBL:BT091899	UniProt:C6T389
ncoils:Coil	EnsemblPlantsGene:GLYMA_04G190800	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113	GO:GO:0008150
GO:GO:0008152	GO:GO:0055114	InterPro:IPR036509	ProteinID:KRH63670.1	EnsemblPlants:KRH63671	ProteinID:KRH63671
ProteinID:KRH63671.1	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625	PANTHER:PTHR42799
PANTHER:PTHR42799:SF1	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0001B153BA	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:46142782..46147411

Molecular Weight (calculated)

21631.0 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.785

Length

194 amino acids

Sequence
(BLAST)

001: MATSGGDEGQ NNPALDPDLD APDDPDHEFA EFGSGCFWGA ELAFQRVVGV VKTEVGYTQG HTPDPNYKLV CTGTTNHVEV VRVQFDPKVC PYNDLLALFW
101: SRHDPTSINR QGNDVGAQYR SGIYYYNDTQ ARLGQESKDA KQLELKEKIV TEILPAKRFY KAEEYHQQYL EKGGGQGNKQ SAEKGCTDPI RCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.