Factsheet for Solyc03g111720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039382	Potato	cytosol, nucleus, plastid	91.84	92.31
VIT_17s0000g09780.t01	Wine grape	cytosol	77.04	79.47
GSMUA_Achr2P05990_001	Banana	cytosol	70.92	72.77
KRH63671	Soybean	cytosol	71.43	72.16
VIT_03s0088g00730.t01	Wine grape	cytosol	21.94	67.19
Solyc06g034020.2.1	Tomato	plastid	60.71	50.21
Solyc03g093690.2.1	Tomato	plastid	58.16	44.36
Solyc02g084030.2.1	Tomato	nucleus	31.63	24.6
Solyc02g063250.2.1	Tomato	cytosol	28.06	20.91

Protein Annotations

EnsemblPlants:Solyc03g111720.2.1	EnsemblPlantsGene:Solyc03g111720.2	Gene3D:3.30.1060.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	HAMAP:MF_01401	InterPro:IPR036509
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF1	PFAM:PF01625	ProteinID:AAB23481.2
SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI000012F653	UniProt:P54153	MapMan:50.1.8	:

Description

E4Peptide methionine sulfoxide reductase (Fragment) [Source:UniProtKB/Swiss-Prot;Acc:P54153]

Coordinates

chr3:+:62378439..62379495

Molecular Weight (calculated)

21919.5 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.719

Length

196 amino acids

Sequence
(BLAST)

001: MEGNNSSSKS TTNPALDPDL DSPDQPGLEF AQFAAGCFWG VELAFQRVGG VVKTEVGYSQ GNVHDPNYKL ICSGTTEHAE AIRIQFDPNV CPYSNLLSLF
101: WSRHDPTTLN RQGNDVGKQY RSGIYYYNDA QAQLARESLE AKQKEFMDKK IVTEILPAKR FYRAEEYHQQ YLEKGGGRGC KQSAAKGCND PIRCYG

Best Arabidopsis Sequence Match ( AT5G61640.2 )
(BLAST)

001: MFRRISRRFL FTTFLCFSVS LSLQNFSMNI LNKLGIGSSR QTNMDPSPIA QVIDDEAPAP GNQFTQFGAG CFWSVELAYQ RVPGVTQTEV GYSQGITHDP
101: SYKDVCSGTT NHAEIVRVQY DPKECSYQSL LDLFWSKHDP TTLNRQGNDV GTQYRSGIYF YNPEQEKLAR ESLERHQQQV DRKVVTEILP AKKFYRAEEH
201: HQQYLSKGGR FGLKQSTEKG CNDPIRCYG

Arabidopsis Description

PMSR1peptidemethionine sulfoxide reductase 1 [Source:TAIR;Acc:AT5G61640]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.