Factsheet for Solyc06g034020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055589	Potato	nucleus	83.12	84.19
VIT_16s0013g00620.t01	Wine grape	nucleus	69.62	80.1
GSMUA_Achr11P...	Banana	cytosol	65.4	75.98
KRH46170	Soybean	nucleus	64.98	75.86
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	63.29	73.89
HORVU1Hr1G055520.1	Barley	cytosol	59.07	71.43
Solyc03g093690.2.1	Tomato	plastid	70.46	64.98
CDX92678	Canola	plastid	68.35	63.78
CDY11057	Canola	plastid	66.24	61.81
CDY03378	Canola	plastid	66.24	61.33
CDY34344	Canola	plastid	66.24	61.33
Bra019187.1-P	Field mustard	plastid	65.4	61.02
Bra013865.1-P	Field mustard	plastid	65.82	60.94
AT4G25130.1	Thale cress	plastid	66.24	60.85
Solyc03g111720.2.1	Tomato	extracellular, plastid	50.21	60.71
KRH14408	Soybean	nucleus	67.51	60.15
KRH73738	Soybean	nucleus	67.09	59.77
KRG98772	Soybean	cytosol, plastid	66.24	58.8
Zm00001d029965_P001	Maize	plastid	64.14	58.69
EER94474	Sorghum	plastid	62.87	58.43
TraesCS1A01G217300.1	Wheat	golgi, plastid	62.03	56.32
TraesCS1D01G219100.1	Wheat	plastid	62.03	56.32
Os10t0563600-01	Rice	plastid	62.03	55.89
TraesCS1B01G230500.1	Wheat	plastid	62.03	55.89
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	64.98	55.6
Solyc02g063250.2.1	Tomato	cytosol	28.27	25.48
Solyc02g084030.2.1	Tomato	nucleus	25.74	24.21

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	ProteinID:AEN03271.1	UniProt:G3K2M3	GO:GO:0003674	GO:GO:0003824
GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036509
HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4
SUPFAM:SSF55068	EnsemblPlantsGene:Solyc06g034020.2	EnsemblPlants:Solyc06g034020.2.1	TIGRFAMs:TIGR00401	UniParc:UPI000229035B	SEG:seg

Description

Methionine sulfoxide reductase A3 [Source:UniProtKB/TrEMBL;Acc:G3K2M3]

Coordinates

chr6:-:23509823..23513899

Molecular Weight (calculated)

26626.2 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.639

Length

237 amino acids

Sequence
(BLAST)

001: MLILKITTIT NPSLLHPFIK ILPISQKMNS PRMNSWLNKF GFGARTESSI DSSSSEIPQG PDHEVPDPGQ QFAQFGAGCF WGVELAYQRV AGVTKTEAGY
101: SQGFVHNPRY EDVCSGTSNH SEVVRVQYDP NECSYESLLD VFWARHDPTT LNRQGNDVGT QYRSGIYFYT PEQEKAALES QDKQQKILNR KIVTEILPAK
201: KFYRAEEDHQ QYLAKGGRFG SKQSAGKGCS DPIRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.