CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g00620.t01	Wine grape	nucleus	78.82	77.67
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	74.38	74.38
GSMUA_Achr11P...	Banana	cytosol	73.89	73.53
HORVU1Hr1G055520.1	Barley	cytosol	70.44	72.96
KRG98772	Soybean	cytosol, plastid	95.57	72.66
AT5G07470.1	Thale cress	cytosol	71.43	71.78
Bra005938.1-P	Field mustard	cytosol	65.02	71.74
Bra005937.1-P	Field mustard	cytosol	65.02	71.74
CDX78295	Canola	cytosol	65.02	71.74
PGSC0003DMT400054153	Potato	cytosol	71.92	71.57
CDY67000	Canola	cytosol	64.53	71.2
CDX81055	Canola	cytosol	64.53	71.2
Bra005939.1-P	Field mustard	cytosol	64.53	70.81
Bra005940.1-P	Field mustard	cytosol	64.04	70.65
CDX81057	Canola	cytosol	64.04	70.65
CDX81056	Canola	cytosol	64.04	70.65
CDX78294	Canola	cytosol	64.04	70.65
CDX70042	Canola	cytosol	69.95	70.3
CDX81053	Canola	cytosol, nucleus, plastid	63.55	70.11
Bra009260.1-P	Field mustard	cytosol	69.46	69.8
CDX81054	Canola	cytosol	27.09	69.62
CDY65236	Canola	nucleus	68.47	68.81
Bra012934.1-P	Field mustard	cytosol	43.84	68.46
PGSC0003DMT400055589	Potato	nucleus	75.37	65.38
Solyc06g034020.2.1	Tomato	plastid	75.86	64.98
CDY65235	Canola	nucleus	65.02	64.71
KRH14408	Soybean	nucleus	84.24	64.29
CDX70041	Canola	nucleus	64.53	64.22
Bra009261.1-P	Field mustard	nucleus	64.53	64.22
KRH73738	Soybean	nucleus	83.25	63.53
KRH63671	Soybean	cytosol	58.62	61.34
AT5G61640.2	Thale cress	plasma membrane	68.97	61.14
Bra040258.1-P	Field mustard	nucleus	16.26	61.11
AT5G07460.1	Thale cress	cytosol	65.02	60.55
CDX78293	Canola	nucleus	65.52	60.18
CDX81052	Canola	cytosol, mitochondrion, nucleus	64.53	59.28
EER94474	Sorghum	plastid	74.38	59.22
Zm00001d029965_P001	Maize	plastid	74.38	58.3
Solyc03g093690.2.1	Tomato	plastid	73.4	57.98
TraesCS1A01G217300.1	Wheat	golgi, plastid	72.91	56.7
TraesCS1D01G219100.1	Wheat	plastid	72.91	56.7
Os10t0563600-01	Rice	plastid	73.4	56.65
TraesCS1B01G230500.1	Wheat	plastid	71.92	55.51
CDY02125	Canola	nucleus	55.66	55.39
CDY23047	Canola	endoplasmic reticulum, extracellular	53.69	54.5
CDY41436	Canola	cytosol, nucleus, plastid	20.2	53.95
Bra016336.1-P	Field mustard	cytosol, nucleus, plastid	20.2	53.95
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	73.4	53.79
Bra005936.1-P	Field mustard	cytosol	65.52	50.57
KRH69798	Soybean	endoplasmic reticulum	33.5	27.2
KRH08095	Soybean	endoplasmic reticulum	33.0	26.8

Protein Annotations

EntrezGene:100796273	Gene3D:3.30.1060.10	MapMan:50.1.8	EMBL:ACUP02005326	EnsemblPlantsGene:GLYMA_08G315900	GO:GO:0003674
GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	UniProt:I1KY75
InterPro:IPR036509	EnsemblPlants:KRH46170	ProteinID:KRH46170	ProteinID:KRH46170.1	ProteinID:KRH46171.1	HAMAP:MF_01401
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068
TIGRFAMs:TIGR00401	UniParc:UPI00023C9FF7	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:43578158..43582261

Molecular Weight (calculated)

22784.5 Da

IEP (calculated)

7.015

GRAVY (calculated)

-0.710

Length

203 amino acids

Sequence
(BLAST)

001: MNLLSRIVGL GSPRAAENMN STTARGPDDD IPAPGQQFAQ FGAGCFWSVE LAFQRASGVI KTEVGYSQGQ LHNPSYEDVC TGTTHHSEVV RVQYDPNVCS
101: YESLLDVFWA RHDPTTLNRQ GNDVGTQYRS GIYYYTPEQE KAAIESLEQQ QKKLNRKIVT EILPAKKFYR AEEYHQQYLE KGGRFGSKQS ASKGCNDPIR
201: CYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.