Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 4
- cytosol 1
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69798 | Soybean | endoplasmic reticulum | 79.2 | 79.2 |
| Solyc02g084030.2.1 | Tomato | nucleus | 66.4 | 65.87 |
| GSMUA_Achr1P08910_001 | Banana | endoplasmic reticulum, golgi | 64.4 | 64.92 |
| Bra037241.1-P | Field mustard | vacuole | 64.0 | 64.0 |
| CDY54549 | Canola | vacuole | 63.6 | 63.6 |
| VIT_04s0023g03200.t01 | Wine grape | golgi | 64.0 | 63.49 |
| CDY30332 | Canola | vacuole | 62.8 | 62.8 |
| Zm00001d045418_P001 | Maize | mitochondrion | 61.2 | 62.7 |
| TraesCS7D01G074700.1 | Wheat | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 59.2 | 61.67 |
| EER89155 | Sorghum | endoplasmic reticulum, golgi | 61.6 | 61.35 |
| AT2G18030.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 61.6 | 60.63 |
| TraesCS7A01G081100.1 | Wheat | endoplasmic reticulum, golgi | 58.8 | 59.27 |
| TraesCS4A01G378100.1 | Wheat | endoplasmic reticulum, golgi | 58.4 | 58.63 |
| Os06t0138100-01 | Rice | golgi | 59.2 | 58.27 |
| PGSC0003DMT400009346 | Potato | endoplasmic reticulum | 64.4 | 57.91 |
| HORVU7Hr1G018320.4 | Barley | plastid | 59.6 | 53.6 |
| KRH46170 | Soybean | nucleus | 26.8 | 33.0 |
| KRH63671 | Soybean | cytosol | 24.4 | 31.44 |
| KRH14408 | Soybean | nucleus | 28.4 | 26.69 |
| KRH73738 | Soybean | nucleus | 27.2 | 25.56 |
| KRG98772 | Soybean | cytosol, plastid | 27.2 | 25.47 |
Protein Annotations
| EntrezGene:100802671 | Gene3D:3.30.1060.10 | MapMan:50.1.8 | EMBL:ACUP02010138 | EnsemblPlantsGene:GLYMA_16G129800 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008113 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0055114 | UniProt:I1MN73 |
| InterPro:IPR036509 | EnsemblPlants:KRH08095 | ProteinID:KRH08095 | ProteinID:KRH08095.1 | HAMAP:MF_01401 | InterPro:Met_Sox_Rdtase_MsrA |
| InterPro:Met_Sox_Rdtase_MsrA_sf | PFAM:PF01625 | PANTHER:PTHR42799 | PANTHER:PTHR42799:SF3 | SUPFAM:SSF55068 | SignalP:SignalP-noTM |
| TIGRFAMs:TIGR00401 | TMHMM:TMhelix | UniParc:UPI000233B904 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr16:+:28282989..28287753
Molecular Weight (calculated)
28113.7 Da
IEP (calculated)
6.881
GRAVY (calculated)
-0.176
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVPAERNHN HFSVLIVLFL FLVHNALCIR FPDRIAQPAL DPLDQHRLRV AVFALGSFWR SEAVFGCLPG VVRTTVGYAG GSKSNPEYRS LGDHAESVKV
101: EYDPQLISFR ELLDVFWSSH DPRQVYGQGP DVGSQYRSII FVNGTEESRM AAVSKEQEQT LSRSSIVTTQ ILQLGTFYPA EPEHQKFELK QNTILLQLIG
201: NLPAEELERS SLATKLNGYV AELCPPNIQK QIDAKINNII KKGWPILRDL
101: EYDPQLISFR ELLDVFWSSH DPRQVYGQGP DVGSQYRSII FVNGTEESRM AAVSKEQEQT LSRSSIVTTQ ILQLGTFYPA EPEHQKFELK QNTILLQLIG
201: NLPAEELERS SLATKLNGYV AELCPPNIQK QIDAKINNII KKGWPILRDL
001: MAISLKRNRF FIPYTNLVFF FFLCVSLLDK TVSIRISNQI SDTVVDSPDR PLKSAVFALG SFWRSEAAFG CINGVVRTSA GYAGGTKTNP EYRNLGDHAE
101: SVQVEYDPRI IGYRQLLDVF WSSHDSRQVF GQGPDVGNQY RSCIFTNSTE ELRLASTSKE REQLNTRSSI VTTQIQQLGT FYRAEPDHQK FELKQHPFLI
201: QLIGNMVEEE LERSALATKL NGYAAELCPP RIQKHIDSRV NEIIRKGWPV LRDI
101: SVQVEYDPRI IGYRQLLDVF WSSHDSRQVF GQGPDVGNQY RSCIFTNSTE ELRLASTSKE REQLNTRSSI VTTQIQQLGT FYRAEPDHQK FELKQHPFLI
201: QLIGNMVEEE LERSALATKL NGYAAELCPP RIQKHIDSRV NEIIRKGWPV LRDI
Arabidopsis Description
MSRA5Peptide methionine sulfoxide reductase A5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL43]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.