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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 3
  • plastid 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH08095 Soybean endoplasmic reticulum 79.2 79.2
GSMUA_Achr1P08910_001 Banana endoplasmic reticulum, golgi 66.0 66.53
Solyc02g084030.2.1 Tomato nucleus 66.0 65.48
VIT_04s0023g03200.t01 Wine grape golgi 64.4 63.89
AT2G18030.1 Thale cress endoplasmic reticulum, golgi, vacuole 63.2 62.2
Bra037241.1-P Field mustard vacuole 62.0 62.0
CDY54549 Canola vacuole 61.6 61.6
PGSC0003DMT400009346 Potato endoplasmic reticulum 68.0 61.15
Zm00001d045418_P001 Maize mitochondrion 59.6 61.07
TraesCS7D01G074700.1 Wheat endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 58.4 60.83
CDY30332 Canola vacuole 60.8 60.8
EER89155 Sorghum endoplasmic reticulum, golgi 60.4 60.16
TraesCS4A01G378100.1 Wheat endoplasmic reticulum, golgi 59.2 59.44
TraesCS7A01G081100.1 Wheat endoplasmic reticulum, golgi 58.8 59.27
Os06t0138100-01 Rice golgi 58.8 57.87
HORVU7Hr1G018320.4 Barley plastid 60.0 53.96
KRH46170 Soybean nucleus 27.2 33.5
KRH63671 Soybean cytosol 25.6 32.99
KRG98772 Soybean cytosol, plastid 28.4 26.59
KRH14408 Soybean nucleus 28.0 26.32
KRH73738 Soybean nucleus 27.6 25.94
Protein Annotations
EntrezGene:100782739Gene3D:3.30.1060.10MapMan:50.1.8EMBL:ACUP02000729EnsemblPlantsGene:GLYMA_02G049400GO:GO:0003674
GO:GO:0003824GO:GO:0008113GO:GO:0008150GO:GO:0008152GO:GO:0055114UniProt:I1JCI6
InterPro:IPR036509EnsemblPlants:KRH69798ProteinID:KRH69798ProteinID:KRH69798.1HAMAP:MF_01401InterPro:Met_Sox_Rdtase_MsrA
InterPro:Met_Sox_Rdtase_MsrA_sfPFAM:PF01625PANTHER:PTHR42799PANTHER:PTHR42799:SF3SUPFAM:SSF55068SignalP:SignalP-noTM
TIGRFAMs:TIGR00401UniParc:UPI0002337050::::
Description
hypothetical protein
Coordinates
chr2:+:4490216..4495264
Molecular Weight (calculated)
28169.6 Da
IEP (calculated)
6.602
GRAVY (calculated)
-0.294
Length
250 amino acids
Sequence
(BLAST)
001: MAVPERNHNH YHHFSVLIVL ILVDNALCIR FPDRIAQPAL DPGDQHRLHV AVFALGSFWR SEAVFGCLPG VVRTTVGYAG GSKPNPEYRS LGDHAESVKV
101: EYDPQLISFR ELLDVFWSSH DPRQVYGQGP DVGNQYRSII FVNGTEESRM AAVSKEQEQT RSRSSIVTTQ ILQLGTFYPA EPEHQKFELK QNTILLQLIG
201: NLPAEELERS SLATKLNGYV AELCPPNIQK QIDAKINDII KKGWPILRDL
Best Arabidopsis Sequence Match ( AT2G18030.1 )
(BLAST)
001: MAISLKRNRF FIPYTNLVFF FFLCVSLLDK TVSIRISNQI SDTVVDSPDR PLKSAVFALG SFWRSEAAFG CINGVVRTSA GYAGGTKTNP EYRNLGDHAE
101: SVQVEYDPRI IGYRQLLDVF WSSHDSRQVF GQGPDVGNQY RSCIFTNSTE ELRLASTSKE REQLNTRSSI VTTQIQQLGT FYRAEPDHQK FELKQHPFLI
201: QLIGNMVEEE LERSALATKL NGYAAELCPP RIQKHIDSRV NEIIRKGWPV LRDI
Arabidopsis Description
MSRA5Peptide methionine sulfoxide reductase A5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL43]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.