CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25130.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055520.1	Barley	cytosol	64.31	83.67
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	65.1	81.77
GSMUA_Achr11P...	Banana	cytosol	65.1	81.37
VIT_16s0013g00620.t01	Wine grape	nucleus	63.14	78.16
Zm00001d029965_P001	Maize	plastid	78.04	76.83
PGSC0003DMT400054153	Potato	cytosol	60.39	75.49
KRH46170	Soybean	nucleus	59.22	74.38
Os10t0563600-01	Rice	plastid	75.69	73.38
TraesCS1A01G217300.1	Wheat	golgi, plastid	73.33	71.65
TraesCS1D01G219100.1	Wheat	plastid	70.59	68.97
EES12389	Sorghum	cytosol	49.41	68.11
TraesCS1B01G230500.1	Wheat	plastid	69.8	67.68
Solyc03g093690.2.1	Tomato	plastid	66.67	66.15
Solyc06g034020.2.1	Tomato	plastid	58.43	62.87
PGSC0003DMT400055589	Potato	nucleus	57.25	62.39
CDX92678	Canola	plastid	61.96	62.2
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	65.88	60.65
CDY03378	Canola	plastid	60.78	60.55
Bra019187.1-P	Field mustard	plastid	60.0	60.24
EES12392	Sorghum	cytosol, mitochondrion, peroxisome	45.1	60.21
Bra013865.1-P	Field mustard	plastid	60.39	60.16
CDY34344	Canola	plastid	60.39	60.16
KRH14408	Soybean	nucleus	62.75	60.15
CDY11057	Canola	plastid	59.61	59.84
KRH73738	Soybean	nucleus	62.35	59.77
AT4G25130.1	Thale cress	plastid	58.43	57.75
KRG98772	Soybean	cytosol, plastid	59.61	56.93
EER89155	Sorghum	endoplasmic reticulum, golgi	26.67	27.09

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	EntrezGene:8058067	UniProt:C5WRH6	EnsemblPlants:EER94474	ProteinID:EER94474
ProteinID:EER94474.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0006979	GO:GO:0008113	GO:GO:0008150
GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0034599
GO:GO:0055114	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625
PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	EnsemblPlantsGene:SORBI_3001G295300	SUPFAM:SSF55068	unigene:Sbi.3575	TIGRFAMs:TIGR00401
UniParc:UPI0001A82EC7	RefSeq:XP_002467476.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:57378431..57380752

Molecular Weight (calculated)

27954.7 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.589

Length

255 amino acids

Sequence
(BLAST)

001: MPPLLTSPAS ASSPLLLASR VGALHHRAAA SVHFLAPRRK TRPSPTPGPA MSWLGKLGLS GLGGSPRASE ASAALAQGPD EDQPAPGNEF AQFGAGCFWG
101: VELAFQRVPG VTRTEVGYSQ GNLHEPTYED VCTGATNHNE VVRVQYDPAA CKFDDLLDTF WARHDPTTPN RQGNDVGTQY RSGIYFYTPE QEKAARESLE
201: KQQKLLNRTI VTEILPAKRF YRAEEYHQQY LEKGGRFGFR QSASKGCNDP IRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.