Factsheet for Zm00001d029965_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25130.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055520.1	Barley	cytosol	63.32	83.67
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	63.71	81.28
GSMUA_Achr11P...	Banana	cytosol	63.32	80.39
VIT_16s0013g00620.t01	Wine grape	nucleus	62.16	78.16
EER94474	Sorghum	plastid	76.83	78.04
KRH46170	Soybean	nucleus	58.3	74.38
PGSC0003DMT400054153	Potato	cytosol	57.14	72.55
TraesCS1D01G219100.1	Wheat	plastid	72.59	72.03
TraesCS1A01G217300.1	Wheat	golgi, plastid	71.43	70.88
Os10t0563600-01	Rice	plastid	71.81	70.72
TraesCS1B01G230500.1	Wheat	plastid	71.43	70.34
Zm00001d003271_P001	Maize	cytosol, extracellular	47.49	66.49
Solyc06g034020.2.1	Tomato	plastid	58.69	64.14
KRH14408	Soybean	nucleus	64.09	62.41
KRH73738	Soybean	nucleus	64.09	62.41
PGSC0003DMT400055589	Potato	nucleus	56.37	62.39
Solyc03g093690.2.1	Tomato	plastid	61.0	61.48
CDX92678	Canola	plastid	59.46	60.63
Bra019187.1-P	Field mustard	plastid	58.3	59.45
Bra013865.1-P	Field mustard	plastid	58.3	58.98
CDY34344	Canola	plastid	58.3	58.98
CDY03378	Canola	plastid	58.3	58.98
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	62.93	58.84
CDY11057	Canola	plastid	57.53	58.66
KRG98772	Soybean	cytosol, plastid	59.85	58.05
AT4G25130.1	Thale cress	plastid	57.14	57.36
Zm00001d045418_P001	Maize	mitochondrion	25.48	27.05

Protein Annotations

EntrezGene:100285733	Gene3D:3.30.1060.10	MapMan:50.1.8	UniProt:A0A1D6K8P1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950
GO:GO:0006979	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009735
GO:GO:0009941	GO:GO:0009987	GO:GO:0034599	GO:GO:0055114	InterPro:IPR036509	HAMAP:MF_01401
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	ProteinID:ONL99890.1	PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4
SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI00022197CC	EnsemblPlantsGene:Zm00001d029965	EnsemblPlants:Zm00001d029965_P001	EnsemblPlants:Zm00001d029965_T001
SEG:seg	:	:	:	:	:

Description

Peptide methionine sulfoxide reductase

Coordinates

chr1:+:96701518..96704228

Molecular Weight (calculated)

28434.4 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.583

Length

259 amino acids

Sequence
(BLAST)

001: MPPLLTSPAS LPSASPLLVS CIGALHRPGP FLHQRAAASV HFLAPHRKTR PPPAMSWLGK LGLSGLGGSP RASEASAALA QGPDEDQPAP GNEFAQFGAG
101: CFWGVELAFQ RVPGVTRTEV GYSQGNIHDP TYEDVCTGTT NHNEVVRVQY DPAACKYDDL LDTFWARHDP TTPNRQGNDV GTQYRSGIYY YNPEQEKAAR
201: ESLEKQQKLL NRKIVTEIVP AKRFYRAEEY HQQYLEKGGR FGFGQSAAKG CNDPIRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.