Factsheet for PGSC0003DMT400055589

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g034020.2.1	Tomato	plastid	84.19	83.12
VIT_16s0013g00620.t01	Wine grape	nucleus	70.09	79.61
PGSC0003DMT400054153	Potato	cytosol	68.8	78.92
GSMUA_Achr11P...	Banana	cytosol	65.81	75.49
KRH46170	Soybean	nucleus	65.38	75.37
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	62.39	71.92
HORVU1Hr1G055520.1	Barley	cytosol	59.4	70.92
CDX92678	Canola	plastid	66.24	61.02
CDY03378	Canola	plastid	65.38	59.77
CDY34344	Canola	plastid	65.38	59.77
CDY11057	Canola	plastid	64.53	59.45
Bra013865.1-P	Field mustard	plastid	64.96	59.38
KRH14408	Soybean	nucleus	67.09	59.02
PGSC0003DMT400039382	Potato	cytosol, nucleus, plastid	49.15	58.97
AT4G25130.1	Thale cress	plastid	64.96	58.91
Bra019187.1-P	Field mustard	plastid	63.68	58.66
KRH73738	Soybean	nucleus	66.24	58.27
KRG98772	Soybean	cytosol, plastid	65.81	57.68
EER94474	Sorghum	plastid	62.39	57.25
Zm00001d029965_P001	Maize	plastid	62.39	56.37
TraesCS1A01G217300.1	Wheat	golgi, plastid	62.39	55.94
TraesCS1D01G219100.1	Wheat	plastid	62.39	55.94
Os10t0563600-01	Rice	plastid	61.54	54.75
TraesCS1B01G230500.1	Wheat	plastid	61.54	54.75
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	63.25	53.43
PGSC0003DMT400026994	Potato	cytosol	28.63	25.77
PGSC0003DMT400009346	Potato	endoplasmic reticulum	26.5	22.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400055589	EnsemblPlantsGene:PGSC0003DMG400021589	Gene3D:3.30.1060.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113
GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	HAMAP:MF_01401	InterPro:IPR036509	InterPro:Met_Sox_Rdtase_MsrA
InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	PFAM:PF01625	PGSC:PGSC0003DMG400021589	SEG:seg
SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI000296978F	UniProt:M1BY65	MapMan:50.1.8	:

Description

Peptide methionine sulfoxide reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400021589]

Coordinates

chr6:-:35674725..35678047

Molecular Weight (calculated)

26437.8 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.701

Length

234 amino acids

Sequence
(BLAST)

001: MSSWLNKFGF GARTESSIDS SSSEILQGPD HDVPDPGQQF AQFGAGCFWG VELVYQRVAG VTKTEAGYSQ GFVHNPRYED VCSGTSNHSE VVRVQYDPNE
101: CSYESLLDVF WARHDPTTLN RQDIIQAKKI FTVVRGRCRH TFCSQLPGPI RGNDVGTQYR SGIYFYTPEQ EKEALESQDR QQKILNRKII TEILPAKKFY
201: RAEEDHQQYL AKGGRFGSKQ SAGKGCNDPI RCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.