Factsheet for TraesCS1A01G217300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25130.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055520.1	Barley	cytosol	67.05	89.29
TraesCS1D01G219100.1	Wheat	plastid	86.21	86.21
TraesCS1B01G230500.1	Wheat	plastid	83.91	83.27
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	62.45	80.3
GSMUA_Achr11P...	Banana	cytosol	62.07	79.41
VIT_16s0013g00620.t01	Wine grape	nucleus	60.15	76.21
EER94474	Sorghum	plastid	71.65	73.33
PGSC0003DMT400054153	Potato	cytosol	57.09	73.04
KRH46170	Soybean	nucleus	56.7	72.91
Os10t0563600-01	Rice	plastid	72.8	72.24
Zm00001d029965_P001	Maize	plastid	70.88	71.43
TraesCS2A01G323300.1	Wheat	cytosol	44.83	64.64
PGSC0003DMT400055589	Potato	nucleus	55.94	62.39
Solyc06g034020.2.1	Tomato	plastid	56.32	62.03
Solyc03g093690.2.1	Tomato	plastid	60.54	61.48
CDX92678	Canola	plastid	59.0	60.63
Bra019187.1-P	Field mustard	plastid	58.24	59.84
CDY11057	Canola	plastid	57.47	59.06
KRH14408	Soybean	nucleus	60.15	59.02
CDY03378	Canola	plastid	57.47	58.59
KRH73738	Soybean	nucleus	59.39	58.27
Bra013865.1-P	Field mustard	plastid	57.09	58.2
CDY34344	Canola	plastid	57.09	58.2
AT4G25130.1	Thale cress	plastid	56.7	57.36
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	60.54	57.04
KRG98772	Soybean	cytosol, plastid	57.09	55.81
TraesCS4A01G378100.1	Wheat	endoplasmic reticulum, golgi	26.05	27.31
TraesCS7A01G081100.1	Wheat	endoplasmic reticulum, golgi	24.52	25.81

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0006979	GO:GO:0008113
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987
GO:GO:0034599	GO:GO:0055114	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf
PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	EnsemblPlantsGene:TraesCS1A01G217300
EnsemblPlants:TraesCS1A01G217300.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:385350905..385353045

Molecular Weight (calculated)

28355.2 Da

IEP (calculated)

8.350

GRAVY (calculated)

-0.588

Length

261 amino acids

Sequence
(BLAST)

001: MPPLLTSPAS LSSSPLRLAS RLGGAALRPT SHHHRRFLAP APQTAPRGTT TGGGFAAMSW LGKLGLGGGG SPRASEASAA LAQGPDEDKP APGCEFAQFG
101: AGCFWGVELV FQRVPGVTRT EVGYSQGAFH DPTYEDVCTG ATGHNEVVRV QYDPAACKYD DLLDTFWARH DPTTPNRQGG DVGTQYRSGI YYYTSEQEKA
201: ALESMEKQQK VQNRKIVTEI LPAKRFYRAE EYHQQYLAKG GRFGFKQSTE KGCNDPIRCY G

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.