Factsheet for TraesCS1B01G230500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25130.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT4G25130.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G219100.1	Wheat	plastid	92.4	93.1
HORVU1Hr1G055520.1	Barley	cytosol	65.78	88.27
TraesCS1A01G217300.1	Wheat	golgi, plastid	83.27	83.91
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	61.6	79.8
GSMUA_Achr11P...	Banana	cytosol	60.84	78.43
VIT_16s0013g00620.t01	Wine grape	nucleus	58.94	75.24
PGSC0003DMT400054153	Potato	cytosol	55.89	72.06
KRH46170	Soybean	nucleus	55.51	71.92
Os10t0563600-01	Rice	plastid	71.86	71.86
Zm00001d029965_P001	Maize	plastid	70.34	71.43
EER94474	Sorghum	plastid	67.68	69.8
TraesCS2B01G359300.1	Wheat	cytosol	43.73	63.54
Solyc06g034020.2.1	Tomato	plastid	55.89	62.03
PGSC0003DMT400055589	Potato	nucleus	54.75	61.54
Solyc03g093690.2.1	Tomato	plastid	58.56	59.92
CDX92678	Canola	plastid	57.41	59.45
KRH14408	Soybean	nucleus	60.08	59.4
GSMUA_Achr5P18310_001	Banana	golgi, mitochondrion, plastid	61.98	58.84
KRH73738	Soybean	nucleus	59.32	58.65
Bra019187.1-P	Field mustard	plastid	55.89	57.87
CDY03378	Canola	plastid	55.89	57.42
AT4G25130.1	Thale cress	plastid	56.27	57.36
CDY11057	Canola	plastid	55.13	57.09
CDY34344	Canola	plastid	55.51	57.03
Bra013865.1-P	Field mustard	plastid	55.51	57.03
KRG98772	Soybean	cytosol, plastid	55.89	55.06

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0006979	GO:GO:0008113
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987
GO:GO:0034599	GO:GO:0055114	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf
PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	EnsemblPlantsGene:TraesCS1B01G230500
EnsemblPlants:TraesCS1B01G230500.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:414158340..414160644

Molecular Weight (calculated)

28407.2 Da

IEP (calculated)

8.440

GRAVY (calculated)

-0.565

Length

263 amino acids

Sequence
(BLAST)

001: MPPLLTSPAS LSSSPLRLAS RLGAAALRPT PSSSSRSRRF LAPTQTAAPG TTTSGGFAAM SWLGKLGLGG GGSPRASEAS AALAQGPDED KPAPGSEFAQ
101: FGAGCFWGVE LVFQRVPGVT RTEVGYSQGA FHDPTYEDVC TGATGHNEVV RVQYDPAACK YDDLLETFWA RHDPTTPNRQ GGDVGTQYRS GIYYYTSEQE
201: KAALESMEKQ QKVQNRKIVT EILPAKRFYK AEEYHQQYLA KGGRFGFKQS TEKGCNDPIR CYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.