CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003271_P001	Maize	cytosol, extracellular	93.51	93.51
Os04t0482000-01	Rice	plasma membrane	86.49	85.56
TraesCS2A01G323300.1	Wheat	cytosol	81.62	83.43
TraesCS2B01G359300.1	Wheat	cytosol	81.08	82.87
TraesCS2D01G339600.1	Wheat	cytosol	80.54	82.32
Os04t0482100-00	Rice	cytosol	80.0	77.89
EES12392	Sorghum	cytosol, mitochondrion, peroxisome	76.76	74.35
EER94474	Sorghum	plastid	68.11	49.41
HORVU2Hr1G083170.1	Barley	cytosol, plastid	60.54	45.16
EER89155	Sorghum	endoplasmic reticulum, golgi	37.3	27.49

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	EntrezGene:8058735	UniProt:C5YAT7	EnsemblPlants:EES12389	ProteinID:EES12389
ProteinID:EES12389.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152
GO:GO:0055114	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625
PANTHER:PTHR42799	PANTHER:PTHR42799:SF8	EnsemblPlantsGene:SORBI_3006G123300	SUPFAM:SSF55068	unigene:Sbi.16619	TIGRFAMs:TIGR00401
UniParc:UPI0001A87149	RefSeq:XP_002448061.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48901956..48904931

Molecular Weight (calculated)

20218.5 Da

IEP (calculated)

6.776

GRAVY (calculated)

-0.521

Length

185 amino acids

Sequence
(BLAST)

001: MSTADAASPA LAPDGDAPAG EGLALAQFAA GCFWSVELAY QRLPGVARTE VGYSQGHRHA PTYRDVCGGG TGHAEVVRVH YDPDACPYAV LLDVFWAKHN
101: PTTLNRQGND VGTQYRSGIY YYTAEQEKLA RESLAAKQKG WKDTIVTEIL PARRFYPAEE YHQQYLQKGG QSANKGCSDP IRCYG

Best Arabidopsis Sequence Match ( AT5G61640.2 )
(BLAST)

001: MFRRISRRFL FTTFLCFSVS LSLQNFSMNI LNKLGIGSSR QTNMDPSPIA QVIDDEAPAP GNQFTQFGAG CFWSVELAYQ RVPGVTQTEV GYSQGITHDP
101: SYKDVCSGTT NHAEIVRVQY DPKECSYQSL LDLFWSKHDP TTLNRQGNDV GTQYRSGIYF YNPEQEKLAR ESLERHQQQV DRKVVTEILP AKKFYRAEEH
201: HQQYLSKGGR FGLKQSTEKG CNDPIRCYG

Arabidopsis Description

PMSR1peptidemethionine sulfoxide reductase 1 [Source:TAIR;Acc:AT5G61640]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.