CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02125	Canola	nucleus	68.5	67.16
CDX70042	Canola	cytosol	59.0	58.42
CDY65236	Canola	nucleus	58.0	57.43
CDX78294	Canola	cytosol	52.0	56.52
CDX78295	Canola	cytosol	52.0	56.52
CDX81053	Canola	cytosol, nucleus, plastid	52.0	56.52
CDX81055	Canola	cytosol	52.0	56.52
CDY67000	Canola	cytosol	51.5	55.98
CDX81057	Canola	cytosol	51.5	55.98
CDX81056	Canola	cytosol	51.0	55.43
AT5G61640.2	Thale cress	plasma membrane	63.0	55.02
KRH46170	Soybean	nucleus	54.5	53.69
CDY65235	Canola	nucleus	53.0	51.96
CDX70041	Canola	nucleus	51.5	50.49
CDY41436	Canola	cytosol, nucleus, plastid	17.5	46.05
CDX81052	Canola	cytosol, mitochondrion, nucleus	50.5	45.7
CDX78293	Canola	nucleus	50.5	45.7
CDX81054	Canola	cytosol	17.0	43.04
KRH73738	Soybean	nucleus	57.0	42.86
CDY03378	Canola	plastid	54.5	42.58
CDY34344	Canola	plastid	54.5	42.58
CDX92678	Canola	plastid	54.0	42.52
CDY11057	Canola	plastid	53.5	42.13
KRH14408	Soybean	nucleus	56.0	42.11
KRG98772	Soybean	cytosol, plastid	55.0	41.2
CDY54549	Canola	vacuole	28.0	22.4
CDY30332	Canola	vacuole	27.5	22.0

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:A0A078GDF3	UniProt:A0A078GDF3	EnsemblPlants:CDY23047	ProteinID:CDY23047
ProteinID:CDY23047.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006605	GO:GO:0006810	GO:GO:0006886
GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00021512001	InterPro:IPR036509
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PFAM:PF01625	PRINTS:PR00906	PANTHER:PTHR42799	PANTHER:PTHR42799:SF4
SUPFAM:SSF55068	InterPro:SecA	TIGRFAMs:TIGR00401	UniParc:UPI0004EE47AC	:	:

Description

BnaC07g31400DBnaC07g31400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDF3]

Coordinates

chrLK032139:-:306903..308851

Molecular Weight (calculated)

23252.6 Da

IEP (calculated)

8.679

GRAVY (calculated)

-0.546

Length

200 amino acids

Sequence
(BLAST)

001: MDSLLPIISS ILMFVVVREA YKRVLGLRPF KVQFTVKTIF FAQFAAGCFR SVELVYQRVP GVTHTEGNPS YEDACSGTSN HVEIVRNQYD PKECRFESLL
101: ELFWWSRHDP TTLNRNNVGS QYRSEIYYYN PEQEKLARES LEHIGRHQHQ VDRKIVTEIL PAKKFYRAEE DNQQYLSKGG RFGLKQSSAK GCNDPIRCYG

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.