CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005940.1-P	Field mustard	cytosol	98.37	98.37
CDX81055	Canola	cytosol	98.37	98.37
CDX81054	Canola	cytosol	41.85	97.47
CDX81056	Canola	cytosol	96.74	96.74
CDY67000	Canola	cytosol	96.74	96.74
CDX81057	Canola	cytosol	96.74	96.74
CDX81053	Canola	cytosol, nucleus, plastid	96.74	96.74
CDX78295	Canola	cytosol	96.2	96.2
CDX70042	Canola	cytosol	77.17	70.3
CDY65236	Canola	nucleus	76.63	69.8
AT5G07470.1	Thale cress	cytosol	75.54	68.81
KRH46170	Soybean	nucleus	70.65	64.04
CDY65235	Canola	nucleus	70.65	63.73
CDX70041	Canola	nucleus	69.57	62.75
CDX81052	Canola	cytosol, mitochondrion, nucleus	69.02	57.47
CDX78293	Canola	nucleus	68.48	57.01
CDY23047	Canola	endoplasmic reticulum, extracellular	56.52	52.0
KRH14408	Soybean	nucleus	73.91	51.13
CDY02125	Canola	nucleus	56.52	50.98
KRH73738	Soybean	nucleus	73.37	50.75
CDX92678	Canola	plastid	69.57	50.39
CDY34344	Canola	plastid	68.48	49.22
CDY11057	Canola	plastid	67.93	49.21
CDY03378	Canola	plastid	67.93	48.83
KRG98772	Soybean	cytosol, plastid	69.57	47.94
CDY41436	Canola	cytosol, nucleus, plastid	17.39	42.11
CDY54549	Canola	vacuole	35.33	26.0
CDY30332	Canola	vacuole	34.78	25.6

Protein Annotations

EnsemblPlants:CDX78294	EnsemblPlantsGene:GSBRNA2T00129643001	Gene3D:3.30.1060.10	GO:A0A078CQD9	GO:GO:0003674	GO:GO:0003824
GO:GO:0008113	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	HAMAP:MF_01401	InterPro:IPR036509
InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf	PANTHER:PTHR42799	PANTHER:PTHR42799:SF9	PFAM:PF01625	ProteinID:CDX78294
ProteinID:CDX78294.1	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EF2DA5	MapMan:50.1.8	:

Description

BnaA03g02060D

Coordinates

chrLK031815:-:55416..56249

Molecular Weight (calculated)

20699.0 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.640

Length

184 amino acids

Sequence
(BLAST)

001: MNLSSITQGN DNDAPAPGNE FAQFAAGCFW GVELAFQRVS GVTHTEVGYT QGFLHNPSYE DICTNTTNHA EVVRVQYDPK ECNFESLLDV FWSRHDPTTL
101: NRQGKDVGTQ YRSGIYFYTP EQEKQAAESM ERHQQQMESK IMTEILPAKK FYRAEEYHQQ YLSKGGQSCG IACNSPLMCS AATA

Best Arabidopsis Sequence Match ( AT4G25130.1 )
(BLAST)

001: MQVLVVSPPL IAAASLSKPL NSLSKAALSF SRAKPICPFP QTSRRPISVY KSPMNNLFNR LGFGSRPQAQ ADPSSAAIAQ GPDDDVPSSG QQFAQFGAGC
101: FWGVELAYQR VPGVTKTEVG YSHGIVHNPS YEDVCTGTTG HNEVVRVQYD PKECSFESLL DVFWNRHDPT TLNRQGGDVG TQYRSGIYYY TDEQERIARE
201: AVEKQQKILN KRIVTEILPA TKFYRAENYH QQYLAKGGRM GLRQSAEKGC KDPIRCYG

Arabidopsis Description

MSR4Peptide methionine sulfoxide reductase A4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P54150]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.