CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70042	Canola	cytosol	97.03	97.03
Bra009260.1-P	Field mustard	cytosol	96.53	96.53
AT5G07470.1	Thale cress	cytosol	85.15	85.15
CDX81053	Canola	cytosol, nucleus, plastid	70.3	77.17
CDX81055	Canola	cytosol	70.3	77.17
CDX78294	Canola	cytosol	69.8	76.63
CDX78295	Canola	cytosol	69.8	76.63
CDY67000	Canola	cytosol	69.31	76.09
CDX81054	Canola	cytosol	29.7	75.95
CDX81056	Canola	cytosol	68.32	75.0
CDX81057	Canola	cytosol	68.32	75.0
KRH46170	Soybean	nucleus	68.81	68.47
CDY65235	Canola	nucleus	68.32	67.65
CDX70041	Canola	nucleus	66.83	66.18
CDX78293	Canola	nucleus	67.33	61.54
CDX81052	Canola	cytosol, mitochondrion, nucleus	66.83	61.09
CDY02125	Canola	nucleus	58.91	58.33
CDY23047	Canola	endoplasmic reticulum, extracellular	57.43	58.0
KRH73738	Soybean	nucleus	71.29	54.14
CDY34344	Canola	plastid	68.32	53.91
KRH14408	Soybean	nucleus	70.79	53.76
CDY11057	Canola	plastid	67.33	53.54
CDX92678	Canola	plastid	67.33	53.54
CDY03378	Canola	plastid	67.82	53.52
KRG98772	Soybean	cytosol, plastid	68.32	51.69
CDY41436	Canola	cytosol, nucleus, plastid	17.33	46.05
CDY54549	Canola	vacuole	32.18	26.0
CDY30332	Canola	vacuole	31.68	25.6

Protein Annotations

Gene3D:3.30.1060.10	MapMan:50.1.8	GO:A0A078JHR9	UniProt:A0A078JHR9	EnsemblPlants:CDY65236	ProteinID:CDY65236
ProteinID:CDY65236.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008113	GO:GO:0008150	GO:GO:0008152
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00045446001	InterPro:IPR036509	HAMAP:MF_01401	InterPro:Met_Sox_Rdtase_MsrA	InterPro:Met_Sox_Rdtase_MsrA_sf
PFAM:PF01625	PANTHER:PTHR42799	PANTHER:PTHR42799:SF9	SUPFAM:SSF55068	TIGRFAMs:TIGR00401	UniParc:UPI0004EEB9E3

Description

BnaC09g47890DBnaC09g47890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHR9]

Coordinates

chrLK034703:-:10974..12136

Molecular Weight (calculated)

22695.4 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.750

Length

202 amino acids

Sequence
(BLAST)

001: MNILNRFGLG SGGQTSTDPS PIAQGSDDDS PAPGNHFAQF AAGCFWGVEL AFQRLPGVTQ TEVGYTQGIT HNPSYEDVCS ETTRHAEVVR VQYDPKGCTF
101: ESLLDLFWSR HDPTTLNRQG NDVGTRYRSG IYFYTPEQEK LARESLERHQ QRMETKIMTE ILPAKKFYRA EEQQQQYLSK GGRYGMGQSC AKGCTDPIRC
201: YG

Best Arabidopsis Sequence Match ( AT5G07470.1 )
(BLAST)

001: MNILNRLGLG SSGQTNMDPS PIAQGNDDDT PAPGNQFAQF GAGCFWGVEL AFQRVPGVTQ TEAGYTQGTV DNPSYGDVCS GTTGHSEVVR VQYDLNDCTY
101: ESLLDLFWSR HDPTTLNRQG NDVGTQYRSG IYFYTPEQEK LARESLERHQ QQMERKIMTE ILPAKKFYRA EEHHQQYLSK GGRFGQGQST AKGCNDPIRC
201: YG

Arabidopsis Description

MSRA3PMSR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UH75]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.