Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017446.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY70133 | Canola | cytosol | 87.42 | 87.42 |
| CDY67068 | Canola | cytosol | 87.42 | 87.42 |
| CDY68854 | Canola | cytosol | 84.77 | 84.77 |
| AT4G14060.1 | Thale cress | cytosol | 84.11 | 84.11 |
| AT2G01520.1 | Thale cress | cytosol | 83.44 | 83.44 |
| CDY17667 | Canola | cytosol | 82.78 | 82.78 |
| AT2G01530.1 | Thale cress | cytosol | 82.12 | 82.12 |
| CDY66633 | Canola | cytosol | 76.82 | 76.82 |
| CDY66340 | Canola | cytosol | 76.16 | 76.16 |
| CDY70188 | Canola | cytosol | 75.5 | 75.5 |
| CDY44127 | Canola | cytosol | 75.5 | 75.5 |
| CDY54855 | Canola | cytosol | 75.5 | 75.5 |
| CDY10958 | Canola | cytosol | 72.85 | 72.85 |
| CDY62739 | Canola | cytosol | 72.85 | 72.85 |
| CDY54858 | Canola | cytosol | 48.34 | 72.28 |
| CDY41329 | Canola | cytosol | 72.19 | 72.19 |
| CDY68124 | Canola | cytosol | 71.52 | 71.52 |
| CDX81683 | Canola | cytosol | 71.52 | 71.52 |
| CDY53523 | Canola | cytosol | 45.7 | 70.41 |
| CDY41328 | Canola | cytosol | 68.21 | 68.21 |
| CDY10959 | Canola | cytosol | 64.9 | 66.67 |
| CDY68125 | Canola | cytosol | 62.91 | 66.43 |
| CDY22226 | Canola | cytosol | 51.66 | 66.1 |
| CDY56716 | Canola | cytosol | 29.14 | 64.71 |
| CDY35450 | Canola | cytosol | 48.34 | 62.39 |
| CDY72258 | Canola | cytosol | 35.1 | 48.62 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 27.15 | 27.15 |
| KRH50391 | Soybean | cytosol | 20.53 | 24.6 |
| KRG89345 | Soybean | nucleus | 24.5 | 24.18 |
Protein Annotations
| EnsemblPlants:CDY49951 | EnsemblPlantsGene:GSBRNA2T00094122001 | Gene3D:3.30.530.20 | GO:A0A078IJ10 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31338 |
| PANTHER:PTHR31338:SF18 | PFAM:PF00407 | ProteinID:CDY49951 | ProteinID:CDY49951.1 | SMART:SM01037 | SUPFAM:SSF55961 |
| UniParc:UPI0002542346 | UniProt:A0A078IJ10 | MapMan:35.1 | : | : | : |
Description
BnaC09g52200DBnaC09g52200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ10]
Coordinates
chrLK032870:-:6052..7229
Molecular Weight (calculated)
17337.5 Da
IEP (calculated)
5.872
GRAVY (calculated)
-0.632
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGTYVTE VPLKGSAEKH YKRWKSENHR FPDAIGHHIQ GVTVLEGDWD SHGSIKIWNY TCDGKPEVFK ERREIDDENN AVTVRGLEGH VMETLKLYDT
101: TIQFIQKSPD DIVCKITMVW EKRTDDSPEP INYMKLVTSM VADMDNHVLK A
101: TIQFIQKSPD DIVCKITMVW EKRTDDSPEP INYMKLVTSM VADMDNHVLK A
001: MATSGTYVTE VPLKGSAEKH YKRWRNENHL FPDAIGHHIQ GVTVHDGEWD SHGALKIWNY TLDGKPEMFK ERREIDDENM AVTFVGLEGH VMEQLKVYDT
101: ILQFIQKSPD DIVCKITMTW EKRADDSPEP SNYMKLVKSL AADMDAHVLK A
101: ILQFIQKSPD DIVCKITMTW EKRADDSPEP SNYMKLVKSL AADMDAHVLK A
Arabidopsis Description
AT4g14060/dl3070w [Source:UniProtKB/TrEMBL;Acc:O23267]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.