Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26450.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT3G26450.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT3G26450.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT3G26450.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019280.1-P | Field mustard | cytosol | 97.35 | 97.35 |
| CDY10958 | Canola | cytosol | 97.35 | 97.35 |
| CDY44127 | Canola | cytosol | 76.16 | 76.16 |
| CDY54855 | Canola | cytosol | 76.16 | 76.16 |
| CDY70188 | Canola | cytosol | 74.17 | 74.17 |
| CDY66340 | Canola | cytosol | 74.17 | 74.17 |
| CDY41329 | Canola | cytosol | 73.51 | 73.51 |
| CDY54858 | Canola | cytosol | 49.01 | 73.27 |
| AT3G26450.1 | Thale cress | cytosol | 73.51 | 73.03 |
| CDY68854 | Canola | cytosol | 72.85 | 72.85 |
| CDY66633 | Canola | cytosol | 72.85 | 72.85 |
| CDY49951 | Canola | cytosol | 72.85 | 72.85 |
| CDY10959 | Canola | cytosol | 70.86 | 72.79 |
| AT3G26460.1 | Thale cress | cytosol | 72.85 | 72.37 |
| CDY67068 | Canola | cytosol | 72.19 | 72.19 |
| CDY17667 | Canola | cytosol | 72.19 | 72.19 |
| CDY70133 | Canola | cytosol | 72.19 | 72.19 |
| CDY41328 | Canola | cytosol | 71.52 | 71.52 |
| CDY22226 | Canola | cytosol | 54.3 | 69.49 |
| CDY56716 | Canola | cytosol | 31.13 | 69.12 |
| CDY35450 | Canola | cytosol | 51.66 | 66.67 |
| CDX81683 | Canola | cytosol | 64.9 | 64.9 |
| CDY53523 | Canola | cytosol | 41.72 | 64.29 |
| CDY68124 | Canola | cytosol | 63.58 | 63.58 |
| CDY68125 | Canola | cytosol | 54.97 | 58.04 |
| CDY72258 | Canola | cytosol | 35.1 | 48.62 |
| KRG89345 | Soybean | nucleus | 25.83 | 25.49 |
| KRH50391 | Soybean | cytosol | 21.19 | 25.4 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 23.18 | 23.18 |
Protein Annotations
| EnsemblPlants:CDY62739 | EnsemblPlantsGene:GSBRNA2T00037553001 | Gene3D:3.30.530.20 | GO:A0A078J7P0 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31338 |
| PANTHER:PTHR31338:SF18 | PFAM:PF00407 | ProteinID:CDY62739 | ProteinID:CDY62739.1 | SMART:SM01037 | SUPFAM:SSF55961 |
| UniParc:UPI0004EE599D | UniProt:A0A078J7P0 | MapMan:35.1 | : | : | : |
Description
BnaC07g50250DBnaC07g50250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7P0]
Coordinates
chrLK034185:+:25174..25805
Molecular Weight (calculated)
17465.8 Da
IEP (calculated)
6.861
GRAVY (calculated)
-0.696
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGTYVTE VPLKGTAEKH YKRWKSENHL FPDTIGHHIQ NVTVHEGEWD SHGGIKIWNY TLDGKQEVYK EKREIDDVNK TMTARGLEGH VMEHFKVCDI
101: VVQFIPKTEN SCVGKITMIW EKRNDEVPEP SSYMKLVKSM VAEMQEHVHK A
101: VVQFIPKTEN SCVGKITMIW EKRNDEVPEP SSYMKLVKSM VAEMQEHVHK A
001: MATSGTYVTQ VPLKGTVEKH FKRYRNENYL FPDTIGHHIQ SVTVHDGEWD TQGGIKIWNY TLGDGKEEVF KERREIDDDN KIVKVVGLEG HVMEQFKVYE
101: IDFQFIPNSE EDCVCKITMI WEKRNDDFPE PSSYMQLLKS MVIDMEDHVL KA
101: IDFQFIPNSE EDCVCKITMI WEKRNDDFPE PSSYMQLLKS MVIDMEDHVL KA
Arabidopsis Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q9LIN0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.