Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26450.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT3G26450.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10958 | Canola | cytosol | 98.68 | 98.68 |
| CDY62739 | Canola | cytosol | 97.35 | 97.35 |
| Bra013721.1-P | Field mustard | cytosol | 76.16 | 76.16 |
| Bra010541.1-P | Field mustard | cytosol | 74.83 | 74.83 |
| Bra034100.1-P | Field mustard | cytosol | 73.51 | 73.51 |
| Bra019278.1-P | Field mustard | cytosol | 76.82 | 73.42 |
| Bra017446.1-P | Field mustard | cytosol | 72.85 | 72.85 |
| AT3G26460.1 | Thale cress | cytosol | 72.85 | 72.37 |
| AT3G26450.1 | Thale cress | cytosol | 72.85 | 72.37 |
| Bra026653.1-P | Field mustard | cytosol | 72.19 | 72.19 |
| Bra034099.1-P | Field mustard | cytosol | 71.52 | 71.52 |
| Bra024879.1-P | Field mustard | cytosol | 71.52 | 71.52 |
| Bra026176.1-P | Field mustard | cytosol | 62.91 | 62.09 |
| Bra026793.1-P | Field mustard | cytosol | 58.28 | 47.83 |
| KRH50391 | Soybean | cytosol | 21.85 | 26.19 |
| KRG89345 | Soybean | nucleus | 26.49 | 26.14 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 23.84 | 23.84 |
Protein Annotations
| EnsemblPlants:Bra019280.1 | EnsemblPlants:Bra019280.1-P | EnsemblPlantsGene:Bra019280 | Gene3D:3.30.530.20 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31338 |
| PANTHER:PTHR31338:SF18 | PFAM:PF00407 | SMART:SM01037 | SUPFAM:SSF55961 | UniParc:UPI0002540F02 | UniProt:M4DRY7 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT4G23680 (E=7e-068) | major latex protein-related / MLP-related
Coordinates
chrA03:-:25271689..25272301
Molecular Weight (calculated)
17502.8 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.759
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGTYVTE VSLKGTAEKH YKRWKSENHL FPDTIGHHIQ NVTVHEGEWD SHGGIKIWNY TLDGKQEVYK EKREIDDENK TMTARGLEGH VMEHFKVCDI
101: VVQFIPKTED SCVGKITMIW EKRNDEVPEP SSYMKLVKSM VSEMQEHVHK A
101: VVQFIPKTED SCVGKITMIW EKRNDEVPEP SSYMKLVKSM VSEMQEHVHK A
001: MATSGTYVTE VPLKGSAEKY YKRWKNENHV FPDAIGHHIQ NVTVHEGEHD SHGSIRSWNY TWDGKEEVFK ERREIDDETK TLTLRGLEGH VMEQLKVYDV
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T
101: VYQFIPKSED TCIGKITLIW EKRNDDSPEP SGYMKFVKSL VADMGNHVSK T
Arabidopsis Description
AT4g23680/F9D16_150 [Source:UniProtKB/TrEMBL;Acc:Q9SUQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.