Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G26460.1 | Thale cress | cytosol | 86.18 | 86.18 |
| CDY62739 | Canola | cytosol | 73.03 | 73.51 |
| AT4G14060.1 | Thale cress | cytosol | 72.37 | 72.85 |
| Bra019280.1-P | Field mustard | cytosol | 72.37 | 72.85 |
| CDY10958 | Canola | cytosol | 72.37 | 72.85 |
| AT2G01520.1 | Thale cress | cytosol | 71.71 | 72.19 |
| AT2G01530.1 | Thale cress | cytosol | 69.74 | 70.2 |
| AT4G23680.1 | Thale cress | cytosol | 67.11 | 67.55 |
| CDY10959 | Canola | cytosol | 63.82 | 65.99 |
| AT4G23670.1 | Thale cress | cytosol | 64.47 | 64.9 |
| Bra019278.1-P | Field mustard | cytosol | 67.11 | 64.56 |
| AT1G14950.1 | Thale cress | cytosol | 61.84 | 60.65 |
| AT1G14930.1 | Thale cress | cytosol | 61.18 | 60.0 |
| AT1G14960.1 | Thale cress | cytosol | 59.87 | 59.48 |
| AT1G14940.1 | Thale cress | cytosol | 58.55 | 57.42 |
| AT1G30990.1 | Thale cress | cytosol | 50.66 | 50.66 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 25.0 | 25.17 |
| KRH50391 | Soybean | cytosol | 20.39 | 24.6 |
| KRG89345 | Soybean | nucleus | 24.34 | 24.18 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:822250 | ProteinID:AEE77162.1 | EMBL:AK226376 | ArrayExpress:AT3G26450 |
| EnsemblPlantsGene:AT3G26450 | RefSeq:AT3G26450 | TAIR:AT3G26450 | RefSeq:AT3G26450-TAIR-G | EnsemblPlants:AT3G26450.1 | TAIR:AT3G26450.1 |
| EMBL:AY072416 | EMBL:AY114713 | ProteinID:BAB02206.1 | InterPro:Bet_v_I/MLP | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009735 | InterPro:IPR023393 | RefSeq:NP_189276.1 |
| PFAM:PF00407 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31338 | PANTHER:PTHR31338:SF18 | UniProt:Q9LIN0 | SMART:SM01037 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | UniParc:UPI000009F823 | : | : | : |
Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q9LIN0]
Coordinates
chr3:-:9681235..9683506
Molecular Weight (calculated)
17792.1 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.602
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSGTYVTQ VPLKGTVEKH FKRYRNENYL FPDTIGHHIQ SVTVHDGEWD TQGGIKIWNY TLGDGKEEVF KERREIDDDN KIVKVVGLEG HVMEQFKVYE
101: IDFQFIPNSE EDCVCKITMI WEKRNDDFPE PSSYMQLLKS MVIDMEDHVL KA
101: IDFQFIPNSE EDCVCKITMI WEKRNDDFPE PSSYMQLLKS MVIDMEDHVL KA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.