Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G14930.1 | Thale cress | cytosol | 82.58 | 82.58 |
| CDY53523 | Canola | cytosol | 48.39 | 76.53 |
| AT2G01520.1 | Thale cress | cytosol | 69.68 | 71.52 |
| AT4G23680.1 | Thale cress | cytosol | 69.68 | 71.52 |
| AT1G14950.1 | Thale cress | cytosol | 70.97 | 70.97 |
| AT4G14060.1 | Thale cress | cytosol | 67.1 | 68.87 |
| AT2G01530.1 | Thale cress | cytosol | 66.45 | 68.21 |
| AT4G23670.1 | Thale cress | cytosol | 63.23 | 64.9 |
| AT1G14960.1 | Thale cress | cytosol | 63.23 | 64.05 |
| AT3G26460.1 | Thale cress | cytosol | 61.29 | 62.5 |
| AT3G26450.1 | Thale cress | cytosol | 57.42 | 58.55 |
| AT1G30990.1 | Thale cress | cytosol | 54.84 | 55.92 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 27.1 | 27.81 |
| KRG89345 | Soybean | nucleus | 23.87 | 24.18 |
| KRH50391 | Soybean | cytosol | 17.42 | 21.43 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:838059 | UniProt:A0A178WJ24 | ProteinID:AEE29244.1 | EMBL:AK229662 |
| ArrayExpress:AT1G14940 | EnsemblPlantsGene:AT1G14940 | RefSeq:AT1G14940 | TAIR:AT1G14940 | RefSeq:AT1G14940-TAIR-G | EnsemblPlants:AT1G14940.1 |
| TAIR:AT1G14940.1 | Unigene:At.5380 | InterPro:Bet_v_I/MLP | ProteinID:CAC83602.1 | GO:GO:0005575 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009607 | InterPro:IPR023393 | RefSeq:NP_172947.1 | ProteinID:OAP17741.1 |
| PFAM:PF00407 | PANTHER:PTHR31338 | PANTHER:PTHR31338:SF18 | UniProt:Q39133 | SMART:SM01037 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | UniParc:UPI000009F8A4 | EMBL:X91961 | : | : | : |
Description
Major latex protein type3 [Source:UniProtKB/TrEMBL;Acc:Q39133]
Coordinates
chr1:-:5154537..5155563
Molecular Weight (calculated)
17880.3 Da
IEP (calculated)
7.179
GRAVY (calculated)
-0.772
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSGTYVAE VPLKGSAEKH YKKWRNENHV FQDAVGHHIQ GCTMHDGDWD SHGSIRSWNI TCDGKPEVFK EKREIDDEKM ALTLKGLEGQ AMEKYKKYEV
101: IYQFIPKSKE GCVCKITLIW EKRNENSPEP INYMKFVKSL VADMDDHVLN GQNKA
101: IYQFIPKSKE GCVCKITLIW EKRNENSPEP INYMKFVKSL VADMDDHVLN GQNKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.