Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026176.1-P | Field mustard | cytosol | 83.01 | 83.01 |
| CDY68124 | Canola | cytosol | 81.7 | 82.78 |
| CDY68125 | Canola | cytosol | 73.2 | 78.32 |
| AT4G14060.1 | Thale cress | cytosol | 69.93 | 70.86 |
| AT2G01520.1 | Thale cress | cytosol | 69.28 | 70.2 |
| AT1G14950.1 | Thale cress | cytosol | 70.59 | 69.68 |
| AT1G30990.1 | Thale cress | cytosol | 68.63 | 69.08 |
| AT2G01530.1 | Thale cress | cytosol | 67.32 | 68.21 |
| AT1G14930.1 | Thale cress | cytosol | 67.97 | 67.1 |
| AT1G14940.1 | Thale cress | cytosol | 64.05 | 63.23 |
| AT4G23680.1 | Thale cress | cytosol | 62.09 | 62.91 |
| AT4G23670.1 | Thale cress | cytosol | 60.78 | 61.59 |
| AT3G26460.1 | Thale cress | cytosol | 60.78 | 61.18 |
| AT3G26450.1 | Thale cress | cytosol | 59.48 | 59.87 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 26.8 | 27.15 |
| KRG89345 | Soybean | nucleus | 22.22 | 22.22 |
| KRH50391 | Soybean | cytosol | 16.99 | 20.63 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:838061 | UniProt:A0A178WI56 | ProteinID:AEE29247.1 | ArrayExpress:AT1G14960 |
| EnsemblPlantsGene:AT1G14960 | RefSeq:AT1G14960 | TAIR:AT1G14960 | RefSeq:AT1G14960-TAIR-G | EnsemblPlants:AT1G14960.1 | TAIR:AT1G14960.1 |
| EMBL:AY042822 | EMBL:AY072537 | EMBL:AY087814 | InterPro:Bet_v_I/MLP | ProteinID:CAC83599.1 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009607 | InterPro:IPR023393 | RefSeq:NP_172949.1 | ProteinID:OAP17936.1 |
| PFAM:PF00407 | PO:PO:0009005 | PANTHER:PTHR31338 | PANTHER:PTHR31338:SF18 | UniProt:Q93WB5 | SMART:SM01037 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | UniParc:UPI00000A3D27 | : | : | : |
Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q93WB5]
Coordinates
chr1:-:5159192..5160179
Molecular Weight (calculated)
17683.1 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.510
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSGTYVTD VPLKGSAEKH YKRWRSENHL VPEAIGHLIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEVLK ERIEMDDENM AVTINGLDGH VMEVLKVYVT
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.