Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra021326.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G14960.1 | Bra021326.1-P | AT1G54840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68124 | Canola | cytosol | 98.69 | 100.0 |
| CDY68125 | Canola | cytosol | 89.54 | 95.8 |
| AT1G14960.1 | Thale cress | cytosol | 83.01 | 83.01 |
| Bra026653.1-P | Field mustard | cytosol | 71.24 | 72.19 |
| Bra010541.1-P | Field mustard | cytosol | 70.59 | 71.52 |
| Bra017446.1-P | Field mustard | cytosol | 70.59 | 71.52 |
| Bra013721.1-P | Field mustard | cytosol | 68.63 | 69.54 |
| Bra024879.1-P | Field mustard | cytosol | 68.63 | 69.54 |
| Bra034100.1-P | Field mustard | cytosol | 66.67 | 67.55 |
| AT1G30990.1 | Thale cress | cytosol | 64.71 | 65.13 |
| Bra019280.1-P | Field mustard | cytosol | 62.09 | 62.91 |
| Bra034099.1-P | Field mustard | cytosol | 58.17 | 58.94 |
| Bra019278.1-P | Field mustard | cytosol | 60.78 | 58.86 |
| Bra026793.1-P | Field mustard | cytosol | 62.75 | 52.17 |
| VIT_01s0011g05140.t01 | Wine grape | cytosol | 27.45 | 27.81 |
| KRG89345 | Soybean | nucleus | 23.53 | 23.53 |
| KRH50391 | Soybean | cytosol | 18.3 | 22.22 |
Protein Annotations
| EnsemblPlants:Bra026176.1 | EnsemblPlants:Bra026176.1-P | EnsemblPlantsGene:Bra026176 | Gene3D:3.30.530.20 | GO:GO:0006950 | GO:GO:0006952 |
| GO:GO:0008150 | GO:GO:0009607 | InterPro:Bet_v_I/MLP | InterPro:IPR023393 | InterPro:START-like_dom_sf | PANTHER:PTHR31338 |
| PANTHER:PTHR31338:SF18 | PFAM:PF00407 | SMART:SM01037 | SUPFAM:SSF55961 | UniParc:UPI000253EFB7 | UniProt:M4EBL7 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT1G14960 (E=1e-075) | major latex protein-related / MLP-related
Coordinates
chrA06:-:5755808..5756450
Molecular Weight (calculated)
17825.2 Da
IEP (calculated)
4.619
GRAVY (calculated)
-0.548
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSGTYVTD VPLKGTAEKH YKRWRSEHNL FPDAIGHHIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEMFK EMIEMDDEKM AVTINGLEGH VMEELKVYVV
101: TFHFIPASEE GCICKVTMVW EKRNEDSPEP INYMKFVEMM VADMDDHILQ DQE
101: TFHFIPASEE GCICKVTMVW EKRNEDSPEP INYMKFVEMM VADMDDHILQ DQE
001: MAMSGTYVTD VPLKGSAEKH YKRWRSENHL VPEAIGHLIQ GVTVHDGDWD SHGTIKIWNY TRDGKEEVLK ERIEMDDENM AVTINGLDGH VMEVLKVYVT
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
101: TLHFIPESKD GCVCKITMVW EKRTEDSPEP IEFMKFVEQM IAHMDDHILQ NQE
Arabidopsis Description
Major latex protein, putative [Source:UniProtKB/TrEMBL;Acc:Q93WB5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.