Factsheet for Bra021326.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43484	Canola	cytosol	92.26	94.51
CDY17557	Canola	cytosol	90.77	90.77
AT1G54840.1	Thale cress	cytosol	61.01	58.74
Bra021325.1-P	Field mustard	cytosol	19.94	34.9
Bra015744.1-P	Field mustard	plastid	14.29	34.78
Bra003718.1-P	Field mustard	extracellular	13.69	32.39
Bra025851.1-P	Field mustard	nucleus	16.96	22.35
Bra012253.1-P	Field mustard	nucleus	30.36	22.17

Protein Annotations

MapMan:12.5.3.2.3	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	EnsemblPlantsGene:Bra021326	EnsemblPlants:Bra021326.1	EnsemblPlants:Bra021326.1-P
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043971	GO:GO:0080111	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	UniProt:M4DXT0
PFscan:PS01031	PANTHER:PTHR34661	PANTHER:PTHR34661:SF3	UniParc:UPI0002545072	:	:

Description

AT1G54840 (E=2e-115) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 44 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA01:-:26230162..26231249

Molecular Weight (calculated)

38119.3 Da

IEP (calculated)

5.169

GRAVY (calculated)

-0.419

Length

336 amino acids

Sequence
(BLAST)

001: MSGTVREPVF AEKSEEEKVL ISLDIEDDKL FLLHFIIGNY FGPDLHDDDG NKRKQSAFQI QASSNLPTKE ELSASLMKRA ELERVYYYVL RNADPSLVFN
101: RKVLSRYFNE KRKASNVDFP LFRDLYPLKL HPESRIRNQY KLIKSIVFIN DPDTSCMRED CVDRFKLLTG LQSFTLSLNI DVTEVDDEPL ETLGTCLEGG
201: PGNHDESEPT LEVNGVIIAD AQAEQMMGLM DIGECADAYL FRVSLPGVKR DERHFSCEVE DNGRVLVRGV TTTGEKQVHR YSQVFKMKTH NLCPPGHFSV
301: SFHLPGPVHP QEFTGSFGTD GIFEGTVMKK LQNQTV

Best Arabidopsis Sequence Match ( AT1G54840.1 )
(BLAST)

001: MSDTMPEIVS PLVAENSQEQ EESVLISLDI EEDKLFLLHF IIGTYFGPDL RKQHHRPKQS AFQIQALKNV VVDELSGSLM KRAELERVYY HIIRNVDPSL
101: VMKPKKLREY FNAKRNDSNR DYPLFVDLFP RKLHPETHVR HKFKFIRSIV FINDPDTSCM REECVARFKR LTGLDSFALS LSVDVTKSNG VVAANEVKVE
201: IDESVEPVKE DNAGTCTSGE ESDVAAKPEV KSEAHGGLMV GLMDIGECDD AYLFRVSLPG VKRDERYFSC EVEDNGKVLV RGVTTTGGKR VKRYSHVFEM
301: QTRSLCPPGN FSVSFRLPGP VHPHEFSGNF GTDGILEGVV MKNLQKQTV

Arabidopsis Description

IDM2Increased DNA methylation 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.