Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01350 | Canola | nucleus | 96.74 | 96.74 |
| AT1G20870.1 | Thale cress | cytosol | 60.87 | 60.48 |
| Bra025851.1-P | Field mustard | nucleus | 23.48 | 42.35 |
| PGSC0003DMT400025891 | Potato | cytosol | 17.17 | 40.1 |
| Bra015744.1-P | Field mustard | plastid | 11.74 | 39.13 |
| VIT_18s0122g00750.t01 | Wine grape | nucleus | 33.48 | 38.99 |
| Bra003718.1-P | Field mustard | extracellular | 11.74 | 38.03 |
| Solyc04g082740.2.1 | Tomato | cytosol | 16.09 | 37.56 |
| KRH44015 | Soybean | nucleus | 31.96 | 37.31 |
| KRH10443 | Soybean | nucleus | 30.65 | 35.79 |
| Bra021325.1-P | Field mustard | cytosol | 13.26 | 31.77 |
| Bra021326.1-P | Field mustard | cytosol | 22.17 | 30.36 |
Protein Annotations
| EnsemblPlants:Bra012253.1 | EnsemblPlants:Bra012253.1-P | EnsemblPlantsGene:Bra012253 | Gene3D:2.60.40.790 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| PANTHER:PTHR34661 | PANTHER:PTHR34661:SF1 | SEG:seg | UniParc:UPI0002541584 | UniProt:M4D6Z3 | MapMan:12.5.3.2.3 |
Description
AT1G20870 (E=2e-170) | LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Coordinates
chrA07:+:9070661..9072114
Molecular Weight (calculated)
51391.9 Da
IEP (calculated)
5.424
GRAVY (calculated)
-0.495
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLCSDGLSS DPYFLVNFIM SHYIGPDVFS DIPRCSASQR LSKRLPPYTP KQIGSSSLTI AQLQNLYYYV LRNASSSLLL HPDMVLMYLK GYLPMEPSGE
101: LHQFTHYFPT SLHPQKRYSP SLEIVKGIVV IDDPALAFIS EEEVQRFRCL SRLDDLRIDR VVSLSPRPVK LLDESRETEK ECLSNGEVTL NGLVSDQELQ
201: DSSKRKKEEE AVAGDAVCVI SDHIPEGLSG DIPQRKGTEQ EEAMSNGLVT DQDCNSSAEP LETCKRKKDE EEEVSAQASC GVISKTPERF RETYKRRRFK
301: NSSTTATNNK NGETLMERDK TDPPLVIVPP EMKECDEEPT VVTKGTASRG TSIGVVDIGV NNVAYFFQVA LPGVSKENDK FSCEIKSDGK VILEGSTTTG
401: QKTIERHSRV FKMNSRTLWP PGPFKLSFNL PGPVDPRFVS PNFRSDGIFE AVVIRQRDTT
101: LHQFTHYFPT SLHPQKRYSP SLEIVKGIVV IDDPALAFIS EEEVQRFRCL SRLDDLRIDR VVSLSPRPVK LLDESRETEK ECLSNGEVTL NGLVSDQELQ
201: DSSKRKKEEE AVAGDAVCVI SDHIPEGLSG DIPQRKGTEQ EEAMSNGLVT DQDCNSSAEP LETCKRKKDE EEEVSAQASC GVISKTPERF RETYKRRRFK
301: NSSTTATNNK NGETLMERDK TDPPLVIVPP EMKECDEEPT VVTKGTASRG TSIGVVDIGV NNVAYFFQVA LPGVSKENDK FSCEIKSDGK VILEGSTTTG
401: QKTIERHSRV FKMNSRTLWP PGPFKLSFNL PGPVDPRFVS PNFRSDGIFE AVVIRQRDTT
001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
Arabidopsis Description
IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.