Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g082740.2.1 | Tomato | cytosol | 83.76 | 83.76 |
| PGSC0003DMT400025889 | Potato | cytosol | 29.95 | 38.56 |
| CDY29497 | Canola | nucleus | 42.13 | 32.55 |
| Bra025851.1-P | Field mustard | nucleus | 41.62 | 32.16 |
| PGSC0003DMT400025890 | Potato | cytosol | 18.78 | 27.01 |
| PGSC0003DMT400073582 | Potato | cytosol | 30.96 | 26.41 |
| CDY31505 | Canola | cytosol | 38.58 | 25.42 |
| VIT_18s0122g00750.t01 | Wine grape | nucleus | 48.73 | 24.3 |
| KRH10443 | Soybean | nucleus | 48.22 | 24.11 |
| KRH44015 | Soybean | nucleus | 47.21 | 23.6 |
| CDY31860 | Canola | nucleus | 42.64 | 18.38 |
| AT1G20870.1 | Thale cress | cytosol | 41.62 | 17.71 |
| Bra012253.1-P | Field mustard | nucleus | 40.1 | 17.17 |
| CDY01350 | Canola | nucleus | 40.1 | 17.17 |
| PGSC0003DMT400073580 | Potato | cytosol, nucleus, plasma membrane | 40.61 | 16.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400025891 | EnsemblPlantsGene:PGSC0003DMG402009997 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | ncoils:Coil | PANTHER:PTHR34661 | PANTHER:PTHR34661:SF1 | PFscan:PS01031 | PGSC:PGSC0003DMG402009997 |
| UniParc:UPI0002956EDE | UniProt:M1AMA3 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402009997]
Coordinates
chr4:-:71897227..71902072
Molecular Weight (calculated)
21539.0 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.339
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MECLHPEKKV KRIIWKQSKE KSNGEDSAEN GTSLMKMEDS VKKRPHSDTM TSGVDRPCMM SLLPLPNLEE CNSGAPAILT GTACKGVTGP PVGVVDIGVS
101: ISAYYFRIAL PGVKKDPGEF NCEIEKDGKV LIRGVTSTGG RTISRYSRVF DMKIQQQCPS GAFTVSFSLP GPVDPRLFSP NFRSDGIFEA VVMKYEQ
101: ISAYYFRIAL PGVKKDPGEF NCEIEKDGKV LIRGVTSTGG RTISRYSRVF DMKIQQQCPS GAFTVSFSLP GPVDPRLFSP NFRSDGIFEA VVMKYEQ
001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
Arabidopsis Description
IDM3Increased DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.